Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33720 - ( pathogenesis-related protein putative )

46 Proteins interacs with AT4G33720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G36530

Predicted

biochemical

FSW = 0.0187

Class C:

extracellular

LOS2 COPPER ION BINDING / PHOSPHOPYRUVATE HYDRATASE
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.0305

Class C:

extracellular

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT2G14610

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0647

Class C:

extracellular

PR1 (PATHOGENESIS-RELATED GENE 1)
AT2G14580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0353

Class C:

extracellular

ATPRB1
AT3G19690

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1439

Class C:

extracellular

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT5G26130

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0916

Class C:

extracellular

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXTRACELLULAR REGION EXPRESSED IN ROOT LEAF EXPRESSED DURING LP04 FOUR LEAVES VISIBLE CONTAINS INTERPRO DOMAIN/S ALLERGEN V5/TPX-1 RELATED CONSERVED SITE (INTERPROIPR018244) ALLERGEN V5/TPX-1 RELATED (INTERPROIPR001283) SCP-LIKE EXTRACELLULAR (INTERPROIPR014044) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PATHOGENESIS-RELATED PROTEIN PUTATIVE (TAIRAT4G337101) HAS 2282 BLAST HITS TO 2195 PROTEINS IN 288 SPECIES ARCHAE - 0 BACTERIA - 49 METAZOA - 1341 FUNGI - 231 PLANTS - 611 VIRUSES - 0 OTHER EUKARYOTES - 50 (SOURCE NCBI BLINK)
AT3G08580

Predicted

two hybrid

FSW = 0.0257

Unknown

AAC1 (ADP/ATP CARRIER 1) ATPADP ANTIPORTER/ BINDING
AT5G13490

Predicted

two hybrid

FSW = 0.0212

Unknown

AAC2 (ADP/ATP CARRIER 2) ATPADP ANTIPORTER/ BINDING
AT1G21720

Predicted

Phenotypic Enhancement

FSW = 0.0078

Unknown

PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G08710

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G11260

Predicted

Affinity Capture-MS

FSW = 0.0367

Unknown

STP1 (SUGAR TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G54270

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0470

Unknown

EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0094

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G22780

Predicted

Synthetic Lethality

FSW = 0.0248

Unknown

PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G24400

Predicted

Affinity Capture-MS

FSW = 0.1236

Unknown

EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC
AT1G74030

Predicted

Synthetic Lethality

FSW = 0.0300

Unknown

ENOLASE PUTATIVE
AT4G26970

Predicted

Affinity Capture-MS

FSW = 0.0939

Unknown

ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G51040

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2053

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT4G28950

Predicted

Affinity Capture-MS

FSW = 0.1070

Unknown

ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.1414

Unknown

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT5G17310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1225

Unknown

UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT2G47160

Predicted

Affinity Capture-MS

FSW = 0.0370

Unknown

BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER
AT5G23450

Predicted

two hybrid

FSW = 0.0193

Unknown

ATLCBK1 (A THALIANA LONG-CHAIN BASE (LCB) KINASE 1) D-ERYTHRO-SPHINGOSINE KINASE/ DIACYLGLYCEROL KINASE
AT1G79450

Predicted

Affinity Capture-MS

FSW = 0.0715

Unknown

ALIS5 (ALA-INTERACTING SUBUNIT 5)
AT1G07180

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE
AT2G45640

Predicted

two hybrid

FSW = 0.0121

Unknown

SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR
AT5G44500

Predicted

Affinity Capture-MS

FSW = 0.0273

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B PUTATIVE / SNRNP-B PUTATIVE / SM PROTEIN B PUTATIVE
AT3G66656

Predicted

two hybrid

FSW = 0.1210

Unknown

AGL91 TRANSCRIPTION FACTOR
AT5G67450

Predicted

two hybrid

FSW = 0.0196

Unknown

AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING
AT1G34065

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0895

Unknown

SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT1G76400

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

FSW = 0.1325

Unknown

RIBOPHORIN I FAMILY PROTEIN
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0846

Unknown

A37 PROTEIN HETERODIMERIZATION
AT1G16190

Predicted

two hybrid

FSW = 0.0045

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G30825

Predicted

Synthetic Lethality

FSW = 0.0109

Unknown

DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE
AT2G03040

Predicted

Affinity Capture-MS

FSW = 0.0573

Unknown

TRANSMEMBRANE PROTEIN-RELATED
AT2G16740

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1664

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT3G03590

Predicted

Affinity Capture-Western

FSW = 0.0598

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G11900

Predicted

Affinity Capture-MS

FSW = 0.1096

Unknown

ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER/ AROMATIC AMINO ACID TRANSMEMBRANE TRANSPORTER/ NEUTRAL AMINO ACID TRANSMEMBRANE TRANSPORTER
AT3G55280

Predicted

Affinity Capture-Western

FSW = 0.0298

Unknown

RPL23AB (RIBOSOMAL PROTEIN L23AB) RNA BINDING / NUCLEOTIDE BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G33670

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0837

Unknown

L-GALACTOSE DEHYDROGENASE (L-GALDH)
AT1G55730

Predicted

Affinity Capture-MS

FSW = 0.0554

Unknown

ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER
AT4G29910

Predicted

Affinity Capture-MS

FSW = 0.0279

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G56510

Predicted

Affinity Capture-MS

FSW = 0.0546

Unknown

APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING
AT4G12790

Predicted

two hybrid

FSW = 0.0300

Unknown

ATP-BINDING FAMILY PROTEIN
AT2G05760

Predicted

two hybrid

FSW = 0.0327

Unknown

XANTHINE/URACIL PERMEASE FAMILY PROTEIN
AT3G44010Predicted

two hybrid

FSW = 0.0148

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29B)

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454