Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G33730 - ( pathogenesis-related protein putative )

86 Proteins interacs with AT4G33730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G01310

Predicted

biochemical

FSW = 0.0222

Class C:

extracellular

 ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G14580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0509

Class C:

extracellular

 ATPRB1
AT2G19990

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0402

Class C:

extracellular

 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)
AT4G07820

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0227

Class C:

extracellular

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT4G27090

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2672

Unknown

 60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT3G08710

Predicted

Phenotypic Enhancement

FSW = 0.0953

Unknown

 ATH9 (THIOREDOXIN H-TYPE 9)
AT4G36750

Predicted

Phenotypic Enhancement

FSW = 0.2199

Unknown

 QUINONE REDUCTASE FAMILY PROTEIN
AT1G16240

Predicted

biochemical

FSW = 0.0353

Unknown

 SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT5G45130

Predicted

interologs mapping

FSW = 0.0044

Unknown

 RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G30390

Predicted

Phenotypic Enhancement

FSW = 0.1453

Unknown

 AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0647

Unknown

 60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G01410

Predicted

synthetic growth defect

FSW = 0.0209

Unknown

 RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT1G65240

Predicted

interologs mapping

FSW = 0.0844

Unknown

 ASPARTYL PROTEASE FAMILY PROTEIN
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.1945

Unknown

 ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT3G54670

Predicted

synthetic growth defect

FSW = 0.0453

Unknown

 TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.0756

Unknown

 SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT3G19960

Predicted

biochemical

FSW = 0.0106

Unknown

 ATM1 (ARABIDOPSIS THALIANA MYOSIN 1) MOTOR
AT4G18760

Predicted

Phenotypic Enhancement

FSW = 0.1227

Unknown

 ATRLP51 (RECEPTOR LIKE PROTEIN 51) PROTEIN BINDING
AT3G20920

Predicted

Phenotypic Enhancement

FSW = 0.1298

Unknown

 TRANSLOCATION PROTEIN-RELATED
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.1717

Unknown

 MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G12110

Predicted

Phenotypic Enhancement

FSW = 0.0172

Unknown

 NRT11 NITRATE TRANSMEMBRANE TRANSPORTER/ TRANSPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.2005

Unknown

 ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT5G12350

Predicted

biochemical

FSW = 0.0070

Unknown

 RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING
AT5G43900

Predicted

biochemical

FSW = 0.0198

Unknown

 MYA2 (ARABIDOPSIS MYOSIN 2) GTP-DEPENDENT PROTEIN BINDING / RAB GTPASE BINDING / MOTOR
AT5G48545

Predicted

biochemical

Reconstituted Complex

two hybrid

FSW = 0.0235

Unknown

 HISTIDINE TRIAD FAMILY PROTEIN / HIT FAMILY PROTEIN
AT2G30260

Predicted

biochemical

FSW = 0.0063

Unknown

 U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT5G57015

Predicted

biochemical

FSW = 0.0041

Unknown

 CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.0742

Unknown

 TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G43810

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Phenotypic Enhancement

FSW = 0.0641

Unknown

 SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.0864

Unknown

 NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G39160

Predicted

Phenotypic Enhancement

FSW = 0.0950

Unknown

 DNA BINDING / TRANSCRIPTION FACTOR
AT5G47630

Predicted

Affinity Capture-Western

Reconstituted Complex

two hybrid

FSW = 0.0067

Unknown

 MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT2G17270

Predicted

biochemical

FSW = 0.0825

Unknown

 MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT1G29330

Predicted

Phenotypic Suppression

FSW = 0.0882

Unknown

 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.0276

Unknown

 ARA6 GTP BINDING / GTPASE
AT2G03120

Predicted

biochemical

FSW = 0.0087

Unknown

 ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT2G43460

Predicted

interologs mapping

synthetic growth defect

interologs mapping

FSW = 0.0767

Unknown

 60S RIBOSOMAL PROTEIN L38 (RPL38A)
AT5G28060

Predicted

Phenotypic Enhancement

FSW = 0.1793

Unknown

 40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100

Predicted

Phenotypic Enhancement

FSW = 0.1380

Unknown

 SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT4G15900

Predicted

Phenotypic Enhancement

FSW = 0.1073

Unknown

 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G02630

Predicted

Phenotypic Enhancement

FSW = 0.0645

Unknown

 EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8)
AT1G06830

Predicted

Phenotypic Enhancement

FSW = 0.0603

Unknown

 GLUTAREDOXIN FAMILY PROTEIN
AT1G07880

Predicted

Phenotypic Suppression

FSW = 0.0326

Unknown

 ATMPK13 MAP KINASE/ KINASE
AT1G08260

Predicted

interologs mapping

Phenotypic Enhancement

interologs mapping

FSW = 0.0970

Unknown

 TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G15240

Predicted

biochemical

FSW = 0.0075

Unknown

 PHOX (PX) DOMAIN-CONTAINING PROTEIN
AT1G15440

Predicted

biochemical

FSW = 0.0260

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.1776

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G20920

Predicted

biochemical

FSW = 0.0122

Unknown

 DEAD BOX RNA HELICASE PUTATIVE
AT1G34340

Predicted

Phenotypic Enhancement

FSW = 0.0970

Unknown

 ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G61670

Predicted

Phenotypic Enhancement

FSW = 0.2207

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT2G03130

Predicted

biochemical

FSW = 0.0167

Unknown

 RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G03890

Predicted

biochemical

FSW = 0.0163

Unknown

 PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN
AT2G14880

Predicted

Phenotypic Enhancement

FSW = 0.0528

Unknown

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.2077

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.2595

Unknown

 APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G32220

Predicted

biochemical

FSW = 0.0114

Unknown

 60S RIBOSOMAL PROTEIN L27 (RPL27A)
AT2G32765

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2365

Unknown

 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT2G34180

Predicted

biochemical

FSW = 0.0274

Unknown

 CIPK13 (CBL-INTERACTING PROTEIN KINASE 13) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.0984

Unknown

 STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G09800

Predicted

Phenotypic Suppression

FSW = 0.1275

Unknown

 PROTEIN BINDING
AT3G14740

Predicted

Phenotypic Enhancement

FSW = 0.1976

Unknown

 PHD FINGER FAMILY PROTEIN
AT3G17520

Predicted

Phenotypic Enhancement

FSW = 0.2161

Unknown

 LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
AT3G25585

Predicted

Synthetic Lethality

FSW = 0.0869

Unknown

 AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G29060

Predicted

Phenotypic Enhancement

FSW = 0.1610

Unknown

 LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 6 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G140401) HAS 970 BLAST HITS TO 889 PROTEINS IN 159 SPECIES ARCHAE - 2 BACTERIA - 5 METAZOA - 379 FUNGI - 260 PLANTS - 176 VIRUSES - 28 OTHER EUKARYOTES - 120 (SOURCE NCBI BLINK)
AT3G46320Predicted

biochemical

FSW = 0.0174

Unknown

 HISTONE H4
AT3G59290

Predicted

interologs mapping

synthetic growth defect

interologs mapping

FSW = 0.1227

Unknown

 EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT4G09310

Predicted

biochemical

FSW = 0.0150

Unknown

 SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN
AT4G19880

Predicted

synthetic growth defect

FSW = 0.0055

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G21480

Predicted

Phenotypic Enhancement

FSW = 0.0325

Unknown

 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G24040

Predicted

Phenotypic Enhancement

FSW = 0.1401

Unknown

 TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE
AT4G26510

Predicted

synthetic growth defect

FSW = 0.0267

Unknown

 ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE
AT4G32530

Predicted

biochemical

FSW = 0.0125

Unknown

 VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT1G02730

Predicted

two hybrid

FSW = 0.0035

Unknown

 ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE
AT1G68390

Predicted

two hybrid

FSW = 0.0802

Unknown

 UNKNOWN PROTEIN
AT2G01070

Predicted

interologs mapping

FSW = 0.1250

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK)
AT3G05040

Predicted

Phenotypic Enhancement

FSW = 0.0494

Unknown

 HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER
AT4G30100

Predicted

Synthetic Lethality

Affinity Capture-Western

biochemical

FSW = 0.0586

Unknown

 TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT5G11570

Predicted

interologs mapping

FSW = 0.1818

Unknown

 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G19300

Predicted

Phenotypic Enhancement

FSW = 0.1385

Unknown

 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G52210

Predicted

Phenotypic Enhancement

FSW = 0.1083

Unknown

 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G66410

Predicted

Phenotypic Enhancement

FSW = 0.1283

Unknown

 PLP3B (PHOSDUCIN-LIKE PROTEIN 3 HOMOLOG) BETA-TUBULIN BINDING
AT4G35520

Predicted

Reconstituted Complex

FSW = 0.0201

Unknown

 MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING
AT5G17000

Predicted

biochemical

FSW = 0.0017

Unknown

 NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT5G23570

Predicted

Affinity Capture-MS

FSW = 0.0254

Unknown

 SGS3 (SUPPRESSOR OF GENE SILENCING 3)
AT5G38110

Predicted

Phenotypic Suppression

FSW = 0.1073

Unknown

 ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.3332

Unknown

 PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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