Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34110 - ( PAB2 (POLY(A) BINDING 2) RNA binding / translation initiation factor )

32 Proteins interacs with AT4G34110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G41430

Experimental

two hybrid

two hybrid

FSW = 0.0914

Unknown

ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) PROTEIN BINDING
AT2G26280

Experimental

two hybrid

two hybrid

FSW = 0.0914

Unknown

CID7 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING
AT1G53650

Experimental

two hybrid

two hybrid

FSW = 0.0653

Unknown

CID8 (CTC-INTERACTING DOMAIN 8) RNA BINDING / PROTEIN BINDING
AT4G10610

Experimental

two hybrid

FSW = 0.0762

Unknown

CID12 RNA BINDING
AT3G14010

Experimental

two hybrid

FSW = 0.0305

Unknown

CID4 (CTC-INTERACTING DOMAIN 4) PROTEIN BINDING
AT5G11440

Experimental

two hybrid

FSW = 0.0239

Unknown

CID5 PROTEIN BINDING
AT3G26935

Predicted

Gene fusion method

FSW = 0.0239

Unknown

ZINC FINGER (DHHC TYPE) FAMILY PROTEIN
AT2G47650

Predicted

Gene fusion method

FSW = 0.0245

Unknown

UXS4 (UDP-XYLOSE SYNTHASE 4) UDP-GLUCURONATE DECARBOXYLASE/ CATALYTIC
AT1G18070

Predicted

in vitro

two hybrid

FSW = 0.0346

Unknown

EF-1-ALPHA-RELATED GTP-BINDING PROTEIN PUTATIVE
AT5G57870

Predicted

in vivo

in vitro

FSW = 0.0333

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE
AT5G10450

Predicted

Affinity Capture-MS

FSW = 0.0041

Unknown

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT3G52150

Predicted

Affinity Capture-MS

FSW = 0.0244

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G27100

Predicted

two hybrid

FSW = 0.0416

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK)
AT5G47010

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT2G20140

Predicted

Gene fusion method

FSW = 0.0376

Unknown

26S PROTEASE REGULATORY COMPLEX SUBUNIT 4 PUTATIVE
AT1G04710

Predicted

Gene fusion method

FSW = 0.0282

Unknown

PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) ACETYL-COA C-ACYLTRANSFERASE/ CATALYTIC
AT3G18130

Predicted

in vivo

in vitro

FSW = 0.0057

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0119

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G41880

Predicted

two hybrid

FSW = 0.0127

Unknown

POLA3 DNA PRIMASE
AT1G01510

Predicted

two hybrid

FSW = 0.0152

Unknown

AN (ANGUSTIFOLIA) PROTEIN BINDING
AT1G78690

Predicted

two hybrid

FSW = 0.0762

Unknown

PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN
AT4G19190

Predicted

two hybrid

FSW = 0.0134

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT5G01580

Predicted

two hybrid

FSW = 0.0625

Unknown

OSH1 (OAS HIGH ACCUMULATION 1) CATALYTIC
AT5G51795

Predicted

two hybrid

FSW = 0.0269

Unknown

KIN17 DNA-BINDING PROTEIN-RELATED
AT1G06590

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0241

Unknown

UNKNOWN PROTEIN
AT4G15930

Predicted

Affinity Capture-MS

FSW = 0.0062

Unknown

MICROTUBULE MOTOR
AT5G10960

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0097

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G23570

Predicted

Affinity Capture-Western

FSW = 0.0627

Unknown

SGS3 (SUPPRESSOR OF GENE SILENCING 3)
AT5G25060

Predicted

Affinity Capture-MS

FSW = 0.0305

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G51980

Predicted

Gene fusion method

FSW = 0.1922

Unknown

WD-40 REPEAT FAMILY PROTEIN / ZFWD2 PROTEIN (ZFWD2) PUTATIVE
AT4G29040

Predicted

Gene fusion method

FSW = 0.0360

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT4G13020

Predicted

Gene fusion method

FSW = 0.0074

Unknown

MHK ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454