Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34270 - ( TIP41-like family protein )
16 Proteins interacs with AT4G34270Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G58500 | Predictedtwo hybridPhenotypic Suppression | FSW = 0.1109
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G19830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0211
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0063
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G10430 | Predictedtwo hybridtwo hybridtwo hybridtwo hybrid | FSW = 0.0949
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT2G42500 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1138
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G26720 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1528
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G51740 | Predictedtwo hybridinteraction prediction | FSW = 0.0495
| Unknown | SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING |
AT1G08940 | PredictedAffinity Capture-MS | FSW = 0.0495
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT3G06670 | PredictedAffinity Capture-MS | FSW = 0.0802
| Unknown | BINDING |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.0316
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT2G28360 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0205
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT3G08850 | Predictedinterologs mapping | FSW = 0.0702
| Unknown | RAPTOR1 NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G53000 | Predictedtwo hybridSynthetic Rescuesynthetic growth defectinteraction prediction | FSW = 0.1976
| Unknown | TAP46 (2A PHOSPHATASE ASSOCIATED PROTEIN OF 46 KD) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT5G09900 | PredictedAffinity Capture-MS | FSW = 0.0261
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT1G07990 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454