Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34370 - ( ARI1 (ARIADNE) protein binding / zinc ion binding )
36 Proteins interacs with AT4G34370Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G36340 | Predictedtwo hybridtwo hybridin vitroin vivotwo hybridtwo hybridin vivoin vitro | FSW = 0.0281
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT3G05630 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | PLDP2 PHOSPHOLIPASE D |
AT2G19080 | Predictedtwo hybrid | FSW = 0.0274
| Unknown | METAXIN-RELATED |
AT3G58610 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1304
| Unknown | KETOL-ACID REDUCTOISOMERASE |
AT5G57090 | Predictedtwo hybrid | FSW = 0.0269
| Unknown | EIR1 (ETHYLENE INSENSITIVE ROOT 1) AUXIN EFFLUX TRANSMEMBRANE TRANSPORTER/ AUXINHYDROGEN SYMPORTER/ TRANSPORTER |
AT5G17310 | Predictedtwo hybrid | FSW = 0.0128
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT1G21700 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.0403
| Unknown | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT5G35530 | Predictedtwo hybrid | FSW = 0.0087
| Unknown | 40S RIBOSOMAL PROTEIN S3 (RPS3C) |
AT5G59470 | Predictedtwo hybrid | FSW = 0.0250
| Unknown | PQ-LOOP REPEAT FAMILY PROTEIN / TRANSMEMBRANE FAMILY PROTEIN |
AT2G18030 | Predictedtwo hybrid | FSW = 0.0513
| Unknown | PEPTIDE METHIONINE SULFOXIDE REDUCTASE FAMILY PROTEIN |
AT3G54710 | Predictedtwo hybrid | FSW = 0.0600
| Unknown | CDT1B (ARABIDOPSIS HOMOLOG OF YEAST CDT1 BARABIDOPSIS HOMOLOG OF YEAST CDT1 B) CYCLIN-DEPENDENT PROTEIN KINASE |
AT3G57350 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT1G20380 | Predictedtwo hybrid | FSW = 0.0821
| Unknown | PROLYL OLIGOPEPTIDASE PUTATIVE / PROLYL ENDOPEPTIDASE PUTATIVE / POST-PROLINE CLEAVING ENZYME PUTATIVE |
AT1G50970 | Predictedtwo hybrid | FSW = 0.1026
| Unknown | MEMBRANE TRAFFICKING VPS53 FAMILY PROTEIN |
AT3G04240 | Predictedtwo hybrid | FSW = 0.0195
| Unknown | SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0346
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0188
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G57020 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | NMT1 (MYRISTOYL-COAPROTEIN N-MYRISTOYLTRANSFERASE) GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE/ MYRISTOYLTRANSFERASE |
AT2G20635 | Predictedtwo hybrid | FSW = 0.0644
| Unknown | ATP BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G18110 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0527
| Unknown | NCBP (NOVEL CAP-BINDING PROTEIN) RNA BINDING / TRANSLATION INITIATION FACTOR |
AT1G10980 | PredictedPhenotypic Enhancement | FSW = 0.1718
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK) |
AT1G66590 | PredictedPhenotypic Enhancement | FSW = 0.0827
| Unknown | COX19 FAMILY PROTEIN |
AT1G78770 | PredictedPhenotypic Enhancement | FSW = 0.0377
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G23820 | Predictedtwo hybrid | FSW = 0.0225
| Unknown | METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN |
AT3G45240 | Predictedtwo hybridPhenotypic Enhancement | FSW = 0.1025
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT4G27130 | PredictedPhenotypic Enhancement | FSW = 0.1060
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT4G29580 | PredictedPhenotypic Enhancement | FSW = 0.1216
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT1G23300 | Predictedtwo hybrid | FSW = 0.0228
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT2G31020 | Predictedtwo hybridinterologs mapping | FSW = 0.0089
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0550
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G18660 | Predictedsynthetic growth defect | FSW = 0.0323
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0379
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT5G17860 | PredictedPhenotypic Enhancement | FSW = 0.0859
| Unknown | CAX7 (CALCIUM EXCHANGER 7) CALCIUMSODIUM ANTIPORTER/ CATIONCATION ANTIPORTER |
ATCG00905 | PredictedPhenotypic Enhancement | FSW = 0.0916
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454