Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G34540 - ( isoflavone reductase family protein )

53 Proteins interacs with AT4G34540
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G07680

Predicted

two hybrid

FSW = 0.0129

Unknown

EMP24/GP25L/P24 FAMILY PROTEIN
AT5G42570

Predicted

in vivo

FSW = 0.0373

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN ENDOPLASMIC RETICULUM PLASMA MEMBRANE EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S B-CELL RECEPTOR-ASSOCIATED 31-LIKE (INTERPROIPR008417) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G119051) HAS 311 BLAST HITS TO 268 PROTEINS IN 81 SPECIES ARCHAE - 2 BACTERIA - 2 METAZOA - 134 FUNGI - 41 PLANTS - 73 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK)
AT5G20020

Predicted

two hybrid

FSW = 0.0043

Unknown

RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G74560

Predicted

two hybrid

FSW = 0.0035

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
ATCG00480Predicted

two hybrid

FSW = 0.0372

Unknown

CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE
AT5G62620

Predicted

two hybrid

FSW = 0.0164

Unknown

GALACTOSYLTRANSFERASE FAMILY PROTEIN
AT3G52150

Predicted

two hybrid

FSW = 0.0071

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT1G12310

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0216

Unknown

CALMODULIN PUTATIVE
AT2G01630

Predicted

Phenotypic Enhancement

FSW = 0.0099

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE
AT3G18190

Predicted

in vitro

FSW = 0.0446

Unknown

CHAPERONIN PUTATIVE
AT5G45970

Predicted

Affinity Capture-MS

far western blotting

FSW = 0.0333

Unknown

ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT5G07300

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

BON2 (BONZAI 2) CALCIUM-DEPENDENT PHOSPHOLIPID BINDING
AT5G59840

Predicted

Affinity Capture-Western

FSW = 0.0144

Unknown

RAS-RELATED GTP-BINDING FAMILY PROTEIN
AT1G24510

Predicted

in vitro

Affinity Capture-MS

Co-crystal Structure

FSW = 0.0458

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT5G47100

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0062

Unknown

CBL9 CALCIUM ION BINDING
AT5G54280

Predicted

Phenotypic Suppression

Phenotypic Suppression

FSW = 0.0807

Unknown

ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR
AT5G20890

Predicted

Co-crystal Structure

FSW = 0.0257

Unknown

CHAPERONIN PUTATIVE
AT4G32830

Predicted

two hybrid

FSW = 0.0253

Unknown

ATAUR1 (ATAURORA1) HISTONE KINASE(H3-S10 SPECIFIC) / KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G34430

Predicted

Affinity Capture-Western

FSW = 0.0073

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G57300

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G10130

Predicted

two hybrid

FSW = 0.0031

Unknown

ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE
AT5G62480

Predicted

Affinity Capture-MS

FSW = 0.0172

Unknown

ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9) GLUTATHIONE TRANSFERASE
AT4G04200

Predicted

two hybrid

FSW = 0.0571

Unknown

PEPTIDASE
AT4G15930

Predicted

two hybrid

FSW = 0.0145

Unknown

MICROTUBULE MOTOR
AT1G24706

Predicted

two hybrid

FSW = 0.0026

Unknown

UNKNOWN PROTEIN
AT1G34420

Predicted

two hybrid

FSW = 0.0408

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN
AT4G11330

Predicted

two hybrid

FSW = 0.0169

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT4G17760

Predicted

two hybrid

FSW = 0.0368

Unknown

DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III
AT3G10070

Predicted

two hybrid

FSW = 0.0069

Unknown

TAF12 (TBP-ASSOCIATED FACTOR 12) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT3G14100

Predicted

two hybrid

FSW = 0.0075

Unknown

OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE
AT3G29330

Predicted

two hybrid

FSW = 0.0357

Unknown

UNKNOWN PROTEIN
AT3G46940

Predicted

two hybrid

FSW = 0.0136

Unknown

DEOXYURIDINE 5-TRIPHOSPHATE NUCLEOTIDOHYDROLASE FAMILY
AT3G52120

Predicted

two hybrid

FSW = 0.0317

Unknown

SWAP (SUPPRESSOR-OF-WHITE-APRICOT)/SURP DOMAIN-CONTAINING PROTEIN / D111/G-PATCH DOMAIN-CONTAINING PROTEIN
AT4G29040

Predicted

two hybrid

FSW = 0.0062

Unknown

RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE
AT1G18660

Predicted

two hybrid

FSW = 0.0211

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT2G26590

Predicted

two hybrid

FSW = 0.0317

Unknown

ADHESION REGULATING MOLECULE FAMILY
AT4G32640

Predicted

two hybrid

FSW = 0.0204

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT5G35430

Predicted

two hybrid

FSW = 0.0168

Unknown

BINDING
AT5G59890

Predicted

two hybrid

in vitro

two hybrid

in vivo

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0048

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT5G15020

Predicted

two hybrid

FSW = 0.0380

Unknown

SNL2 (SIN3-LIKE 2)
AT5G22840

Predicted

two hybrid

FSW = 0.0045

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G53100

Predicted

two hybrid

FSW = 0.0166

Unknown

OXIDOREDUCTASE PUTATIVE
AT2G07340

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0260

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G27000

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0057

Unknown

ARP2 (ACTIN RELATED PROTEIN 2) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G15130

Predicted

in vitro

Co-crystal Structure

FSW = 0.0571

Unknown

CATALYTIC/ CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE
AT5G57320

Predicted

in vitro

in vivo

in vitro

FSW = 0.0172

Unknown

VILLIN PUTATIVE
AT5G59160

Predicted

Affinity Capture-Western

FSW = 0.0057

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G60570

Predicted

Reconstituted Complex

FSW = 0.0332

Unknown

KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN
AT5G10220

Predicted

in vivo

Affinity Capture-MS

FSW = 0.0124

Unknown

ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING
AT1G75300

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0850

Unknown

ISOFLAVONE REDUCTASE PUTATIVE
AT1G75290

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0565

Unknown

OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT1G19540

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0863

Unknown

ISOFLAVONE REDUCTASE PUTATIVE
AT4G39230

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1541

Unknown

ISOFLAVONE REDUCTASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454