Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35050 - ( MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3) protein binding )

6 Proteins interacs with AT4G35050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G21100

Experimental

coimmunoprecipitation

Affinity Capture-Western

FSW = 0.0775

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING
AT4G05420

Experimental

two hybrid

FSW = 0.0664

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING
AT5G58230

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0544

Unknown

MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT1G13230

Predicted

Gene fusion method

FSW = 0.1569

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT2G19520

Predicted

Phylogenetic profile method

FSW = 0.1233

Unknown

FVE METAL ION BINDING
AT2G16780

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2455

Unknown

MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454