Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35090 - ( CAT2 (CATALASE 2) catalase )
31 Proteins interacs with AT4G35090Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G09320 | Experimentaltwo hybrid | FSW = 0.0994
| Class A:plastidperoxisomeClass B:vacuoleplasma membranenucleusmitochondrioncytosolClass D:plastid (p = 0.78) | NDPK1 ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT1G78300 | Experimental | FSW = 0.0120
| Class A:peroxisomeClass B:vacuoleplastidplasma membranenucleusmitochondrioncytosolcytoskeleton | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G01950 | Experimentalphage display | FSW = 0.0151
| Class D:unclear (p = 0.09)plastid (p = 0.78)mitochondrion (p = 0.82) | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT5G35410 | Experimental | FSW = 0.0456
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT1G20620 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1001
| Class C:plastidperoxisomemitochondrion | CAT3 (CATALASE 3) CATALASE |
AT1G20630 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1648
| Class C:plastidperoxisomemitochondrion | CAT1 (CATALASE 1) CATALASE |
AT2G33210 | Predictedpull down | FSW = 0.0056
| Class C:plastidmitochondrion | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0822
| Class C:plastidmitochondrion | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0882
| Class C:plastidmitochondrion | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G13490 | Predictedpull down | FSW = 0.0257
| Class C:plastidmitochondrion | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G20260 | PredictedSynthetic Lethality | FSW = 0.0327
| Class C:plastid | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0954
| Class C:plastid | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.1535
| Class C:plastid | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G48190 | Predictedtwo hybrid | FSW = 0.0196
| Class C:plastid | ATM (ATAXIA-TELANGIECTASIA MUTATED) 1-PHOSPHATIDYLINOSITOL-3-PHOSPHATE 5-KINASE |
AT5G23710 | Predictedtwo hybrid | FSW = 0.0645
| Class C:plastid | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G29800 | PredictedPhenotypic Enhancement | FSW = 0.3043
| Class C:mitochondrion | AAA-TYPE ATPASE FAMILY |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0226
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G34450 | PredictedPhenotypic Enhancement | FSW = 0.3049
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0184
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT1G76300 | PredictedPhenotypic Enhancement | FSW = 0.1137
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
AT1G29330 | PredictedPhenotypic Enhancement | FSW = 0.1324
| Unknown | ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR |
AT1G15240 | Predictedbiochemicalinterologs mapping | FSW = 0.0411
| Unknown | PHOX (PX) DOMAIN-CONTAINING PROTEIN |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.2177
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.1024
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT3G06460 | PredictedPhenotypic Enhancement | FSW = 0.0908
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G09800 | PredictedPhenotypic Enhancement | FSW = 0.2517
| Unknown | PROTEIN BINDING |
AT4G33950 | PredictedPhenotypic Suppression | FSW = 0.2588
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT1G61670 | PredictedPhenotypic Enhancement | FSW = 0.2014
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.3040
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT5G52200 | PredictedPhenotypic Enhancement | FSW = 0.2986
| Unknown | UNKNOWN PROTEIN |
AT5G53120 | PredictedPhenotypic Enhancement | FSW = 0.2635
| Unknown | SPDS3 (SPERMIDINE SYNTHASE 3) SPERMIDINE SYNTHASE/ SPERMINE SYNTHASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454