Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G35310 - ( CPK5 (calmodulin-domain protein kinase 5) ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase )
47 Proteins interacs with AT4G35310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.0486
| Class C:plasma membrane | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT3G49910 | PredictedAffinity Capture-MS | FSW = 0.2878
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L26 (RPL26A) |
AT2G36160 | PredictedAffinity Capture-MS | FSW = 0.4889
| Class C:plasma membrane | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT3G12580 | PredictedAffinity Capture-MS | FSW = 0.3493
| Class C:plasma membrane | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT1G18540 | PredictedAffinity Capture-MS | FSW = 0.5016
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L6 (RPL6A) |
AT5G20010 | PredictedAffinity Capture-MS | FSW = 0.5072
| Class C:plasma membrane | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G61430 | PredictedAffinity Capture-MS | FSW = 0.5100
| Class C:plasma membrane | PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A) WATER CHANNEL |
AT1G63290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6237
| Class C:plasma membrane | RIBULOSE-PHOSPHATE 3-EPIMERASE CYTOSOLIC PUTATIVE / PENTOSE-5-PHOSPHATE 3-EPIMERASE PUTATIVE |
AT1G55690 | PredictedAffinity Capture-MS | FSW = 0.2577
| Class C:plasma membrane | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.2801
| Class C:plasma membrane | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT1G20760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5221
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT2G17290 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0183
| Class C:plasma membrane | CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4923
| Unknown | ENDORIBONUCLEASE L-PSP FAMILY PROTEIN |
AT5G24400 | PredictedAffinity Capture-MS | FSW = 0.3722
| Unknown | EMB2024 (EMBRYO DEFECTIVE 2024) 6-PHOSPHOGLUCONOLACTONASE/ CATALYTIC |
AT2G31170 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4596
| Unknown | SYCO ARATH ATP BINDING / AMINOACYL-TRNA LIGASE/ CYSTEINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0343
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G21640 | PredictedAffinity Capture-MS | FSW = 0.4525
| Unknown | NADK2 NAD+ KINASE/ CALMODULIN BINDING |
AT3G19160 | PredictedAffinity Capture-MS | FSW = 0.3445
| Unknown | ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE |
AT4G30950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0629
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT4G26600 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2731
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT5G05990 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4772
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.2612
| Unknown | PSF2 |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0328
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G54290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3832
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G03130 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0052
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G37540 | PredictedAffinity Capture-MS | FSW = 0.5305
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT3G03590 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3694
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.0862
| Unknown | HISTONE H4 |
AT4G26270 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | PFK3 (PHOSPHOFRUCTOKINASE 3) 6-PHOSPHOFRUCTOKINASE |
AT1G55730 | PredictedAffinity Capture-MS | FSW = 0.2089
| Unknown | ATCAX5 CALCIUMCATION ANTIPORTER/ CATIONCATION ANTIPORTER |
AT2G03040 | PredictedAffinity Capture-MS | FSW = 0.4649
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT2G16090 | PredictedAffinity Capture-MS | FSW = 0.5674
| Unknown | ZINC FINGER PROTEIN-RELATED |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.2981
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT3G08650 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0535
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G23570 | PredictedAffinity Capture-MS | FSW = 0.2747
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT4G36800 | PredictedAffinity Capture-MS | FSW = 0.5842
| Unknown | RCE1 (RUB1 CONJUGATING ENZYME 1) NEDD8 LIGASE/ SMALL CONJUGATING PROTEIN LIGASE |
AT5G06420 | PredictedAffinity Capture-MS | FSW = 0.5035
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G37850 | PredictedAffinity Capture-MS | FSW = 0.4916
| Unknown | SOS4 (SALT OVERLY SENSITIVE 4) KINASE/ PYRIDOXAL KINASE |
AT5G46150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4128
| Unknown | LEM3 (LIGAND-EFFECT MODULATOR 3) FAMILY PROTEIN / CDC50 FAMILY PROTEIN |
AT5G60870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1093
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G67380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2536
| Unknown | CKA1 (CASEIN KINASE ALPHA 1) KINASE |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.0466
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.2679
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT5G17000 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3285
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G54200 | PredictedAffinity Capture-MS | FSW = 0.4013
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454