Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35450 - ( AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) protein binding )
33 Proteins interacs with AT4G35450Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G35000 | ExperimentalAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybrid | FSW = 0.0527
| Unknown | APX3 (ASCORBATE PEROXIDASE 3) L-ASCORBATE PEROXIDASE |
AT5G05000 | ExperimentalReconstituted Complextwo hybridpull downin vitro | FSW = 0.0991
| Unknown | TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) GTP BINDING |
AT3G17970 | ExperimentalReconstituted Complexin vitropull down | FSW = 0.0635
| Unknown | ATTOC64-III (ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-III) BINDING / CARBON-NITROGEN LIGASE WITH GLUTAMINE AS AMIDO-N-DONOR |
AT1G02280 | ExperimentalReconstituted Complexin vitropull down | FSW = 0.0608
| Unknown | TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT3G52420 | Experimentaltwo hybridReconstituted ComplexAffinity Capture-Westernin vitrocoimmunoprecipitationaffinity technologypull down | FSW = 0.1111
| Unknown | OEP7 (OUTER ENVELOPE MEMBRANE PROTEIN 7) |
AT5G17770 | Experimentaltwo hybrid | FSW = 0.0123
| Unknown | ATCBR (ARABIDOPSIS THALIANA NADHCYTOCHROME B5 REDUCTASE 1) CYTOCHROME-B5 REDUCTASE |
AT2G32720 | Experimentaltwo hybrid | FSW = 0.0247
| Unknown | CB5-B (CYTOCHROME B5 ISOFORM B) HEME BINDING |
AT4G35970 | Experimentaltwo hybrid | FSW = 0.0923
| Unknown | APX5 (ASCORBATE PEROXIDASE 5) L-ASCORBATE PEROXIDASE/ HEME BINDING / PEROXIDASE |
AT4G09040 | PredictedGene fusion method | FSW = 0.0250
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G08900 | PredictedGene fusion method | FSW = 0.0245
| Unknown | ARGINASE |
AT5G08080 | PredictedGene fusion method | FSW = 0.0171
| Unknown | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
AT4G10380 | PredictedGene fusion method | FSW = 0.0234
| Unknown | NIP51 ARSENITE TRANSMEMBRANE TRANSPORTER/ BORON TRANSPORTER/ WATER CHANNEL |
AT2G17390 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0824
| Unknown | AKR2B (ANKYRIN REPEAT-CONTAINING 2B) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT1G16460 | PredictedGene fusion method | FSW = 0.0245
| Unknown | ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2) 3-MERCAPTOPYRUVATE SULFURTRANSFERASE/ THIOSULFATE SULFURTRANSFERASE |
AT5G26200 | PredictedGene fusion methodCo-expression | FSW = 0.1390
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT1G78180 | PredictedGene fusion method | FSW = 0.0493
| Unknown | BINDING |
AT5G59290 | PredictedGene fusion method | FSW = 0.0370
| Unknown | UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) UDP-GLUCURONATE DECARBOXYLASE/ CATALYTIC |
AT5G57450 | PredictedGene fusion method | FSW = 0.0128
| Unknown | XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING |
AT1G61580 | Predictedtwo hybrid | FSW = 0.0033
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G20850 | PredictedGene fusion method | FSW = 0.0049
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT5G12410 | Predictedtwo hybrid | FSW = 0.0089
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT1G04200 | Predictedtwo hybrid | FSW = 0.0317
| Unknown | UNKNOWN PROTEIN |
AT3G50310 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0275
| Unknown | MAPKKK20 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G10390 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0239
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G16720 | PredictedGene fusion method | FSW = 0.0296
| Unknown | ATL2 PROTEIN BINDING / ZINC ION BINDING |
AT4G21220 | PredictedGene fusion method | FSW = 0.0117
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT5G50770 | PredictedGene fusion method | FSW = 0.0741
| Unknown | ATHSD6 (HYDROXYSTEROID DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE |
AT2G45040 | PredictedGene fusion method | FSW = 0.0234
| Unknown | MATRIX METALLOPROTEINASE |
AT5G02360 | PredictedGene fusion method | FSW = 0.1111
| Unknown | DC1 DOMAIN-CONTAINING PROTEIN |
AT4G24160 | PredictedGene fusion method | FSW = 0.0097
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT1G35850 | PredictedGene fusion method | FSW = 0.0234
| Unknown | APUM17 (ARABIDOPSIS PUMILIO 17) RNA BINDING / BINDING |
AT1G33970 | PredictedGene fusion method | FSW = 0.0282
| Unknown | AVIRULENCE-RESPONSIVE PROTEIN PUTATIVE / AVIRULENCE INDUCED GENE PROTEIN PUTATIVE / AIG PROTEIN PUTATIVE |
AT5G64813 | PredictedGene fusion method | FSW = 0.1111
| Unknown | LIP1 (LIGHT INSENSITIVE PERIOD1) GTPASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454