Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35520 - ( MLH3 (MUTL PROTEIN HOMOLOG 3) ATP binding / mismatched DNA binding )
30 Proteins interacs with AT4G35520Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G17380 | Experimentalcoimmunoprecipitation | FSW = 0.0327
| Unknown | MSH4 (MUTS HOMOLOG 4) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING |
AT3G15710 | PredictedAffinity Capture-Western | FSW = 0.1683
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT3G07680 | PredictedColocalization | FSW = 0.0101
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G44610 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1717
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G71860 | PredictedAffinity Capture-Western | FSW = 0.0147
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT3G02600 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT5G58640 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2478
| Unknown | SELENOPROTEIN-RELATED |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0039
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G60180 | PredictedSynthetic Lethality | FSW = 0.0591
| Unknown | URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-purification | FSW = 0.2723
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G02070 | PredictedPhenotypic Enhancement | FSW = 0.0425
| Unknown | MSH6 (MUTS HOMOLOG 6) DAMAGED DNA BINDING |
AT1G72560 | PredictedAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-MS | FSW = 0.2074
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT5G47630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Westerntwo hybridReconstituted ComplexReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridSynthetic RescueReconstituted ComplexCo-purification | FSW = 0.2223
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT4G33730 | PredictedReconstituted Complex | FSW = 0.0201
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G19980 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0978
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.1280
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.0655
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G77990 | PredictedPhenotypic Suppression | FSW = 0.0660
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G09140 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-Westerninteraction predictionEnriched domain pairCo-expression | FSW = 0.0811
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT1G10930 | PredictedAffinity Capture-WesternPhenotypic Suppressioninteraction prediction | FSW = 0.0163
| Unknown | RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT1G13950 | Predictedsynthetic growth defect | FSW = 0.1042
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G26320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.1542
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G77780 | Predictedsynthetic growth defect | FSW = 0.3293
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT3G16565 | PredictedAffinity Capture-MS | FSW = 0.0831
| Unknown | ATP BINDING / ALANINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G24010 | Predictedsynthetic growth defect | FSW = 0.0391
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT4G20870 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0992
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.1340
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G04700 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1853
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT5G13860 | PredictedCo-purificationAffinity Capture-MS | FSW = 0.0942
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G16290 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454