Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35640 - ( ATSERAT32 (Serine acetyltransferase 32) acetyltransferase/ serine O-acetyltransferase )
20 Proteins interacs with AT4G35640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11250 | PredictedAffinity Capture-MS | FSW = 0.1273
| Class C:cytosol | SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR |
AT3G16050 | PredictedAffinity Capture-MS | FSW = 0.0605
| Class C:cytosol | A37 PROTEIN HETERODIMERIZATION |
AT3G28710 | PredictedAffinity Capture-MS | FSW = 0.0458
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT1G07930 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G09820 | PredictedCo-purificationAffinity Capture-MSCo-purification | FSW = 0.0549
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT3G19170 | PredictedAffinity Capture-MS | FSW = 0.0577
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT3G59760 | Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0258
| Unknown | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
AT1G64190 | PredictedAffinity Capture-MS | FSW = 0.0109
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT5G17310 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT4G26600 | Predictedtwo hybridtwo hybridAffinity Capture-MS | FSW = 0.0507
| Unknown | NUCLEOLAR PROTEIN PUTATIVE |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0105
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0357
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT2G16740 | Predictedtwo hybridtwo hybrid | FSW = 0.1081
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT1G25155 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G58340 | PredictedAffinity Capture-MS | FSW = 0.0497
| Unknown | ZF14 ANTIPORTER/ DRUG TRANSPORTER/ TRANSPORTER |
AT2G41530 | PredictedAffinity Capture-MS | FSW = 0.0593
| Unknown | SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS |
AT3G53880 | PredictedCo-purification | FSW = 0.0667
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G00980 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G29910 | PredictedAffinity Capture-MS | FSW = 0.1226
| Unknown | ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING |
AT5G06420 | Predictedtwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1241
| Unknown | ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454