Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35640 - ( ATSERAT32 (Serine acetyltransferase 32) acetyltransferase/ serine O-acetyltransferase )

20 Proteins interacs with AT4G35640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G11250

Predicted

Affinity Capture-MS

FSW = 0.1273

Class C:

cytosol

SYP125 (SYNTAXIN OF PLANTS 125) SNAP RECEPTOR
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0605

Class C:

cytosol

A37 PROTEIN HETERODIMERIZATION
AT3G28710

Predicted

Affinity Capture-MS

FSW = 0.0458

Unknown

H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE
AT1G07930Predicted

Affinity Capture-MS

FSW = 0.0423

Unknown

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G09820

Predicted

Co-purification

Affinity Capture-MS

Co-purification

FSW = 0.0549

Unknown

ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING
AT3G19170

Predicted

Affinity Capture-MS

FSW = 0.0577

Unknown

ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE
AT3G59760

Predicted

comigration in non denaturing gel electrophoresis

FSW = 0.0258

Unknown

OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE
AT1G64190

Predicted

Affinity Capture-MS

FSW = 0.0109

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT5G17310

Predicted

Affinity Capture-MS

FSW = 0.0753

Unknown

UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE
AT4G26600

Predicted

two hybrid

two hybrid

Affinity Capture-MS

FSW = 0.0507

Unknown

NUCLEOLAR PROTEIN PUTATIVE
AT1G19730

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR
AT4G17190

Predicted

Affinity Capture-MS

FSW = 0.0357

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT2G16740

Predicted

two hybrid

two hybrid

FSW = 0.1081

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT1G25155Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G58340

Predicted

Affinity Capture-MS

FSW = 0.0497

Unknown

ZF14 ANTIPORTER/ DRUG TRANSPORTER/ TRANSPORTER
AT2G41530

Predicted

Affinity Capture-MS

FSW = 0.0593

Unknown

SFGH (S-FORMYLGLUTATHIONE HYDROLASE) S-FORMYLGLUTATHIONE HYDROLASE/ HYDROLASE ACTING ON ESTER BONDS
AT3G53880

Predicted

Co-purification

FSW = 0.0667

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT4G00980

Predicted

Affinity Capture-MS

FSW = 0.0405

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT4G29910

Predicted

Affinity Capture-MS

FSW = 0.1226

Unknown

ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) PROTEIN BINDING
AT5G06420

Predicted

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1241

Unknown

ZINC FINGER (CCCH-TYPE/C3HC4-TYPE RING FINGER) FAMILY PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454