Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35800 - ( NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA binding / DNA-directed RNA polymerase )
144 Proteins interacs with AT4G35800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G21670 | Experimentalbiochemical | FSW = 0.0074
| Class B:plastidnucleusClass D:nucleus (p = 0.78) | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) DOUBLE-STRANDED RNA BINDING / NUCLEOTIDE PHOSPHATASE |
AT1G53720 | Experimentalpull downtwo hybridReconstituted ComplexAffinity Capture-Westernaffinity technologyin vitrocoimmunoprecipitation | FSW = 0.0035
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT3G22680 | ExperimentalAffinity Capture-Western | FSW = 0.0071
| Unknown | UNKNOWN PROTEIN |
AT4G12610 | PredictedSynthetic RescueSynthetic RescueCo-purificationAffinity Capture-MSAffinity Capture-MSCo-purificationReconstituted Complexco-fractionationCo-fractionationAffinity Capture-MSPhenotypic SuppressionSynthetic Rescue | FSW = 0.2822
| Class C:plastid | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT1G73820 | PredictedProtein-peptideSynthetic Rescue | FSW = 0.1060
| Class C:plastid | SSU72-LIKE FAMILY PROTEIN |
AT2G06510 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0242
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT3G19980 | PredictedSynthetic Lethality | FSW = 0.0256
| Unknown | ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G48750 | PredictedSynthetic LethalityColocalization | FSW = 0.0436
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G47010 | Predictedin vitro | FSW = 0.0052
| Unknown | LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE |
AT3G18524 | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING |
AT2G30110 | Predictedbiochemical | FSW = 0.0105
| Unknown | ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE |
AT2G18040 | Predictedtwo hybridtwo hybridSynthetic LethalitySynthetic LethalityReconstituted ComplexReconstituted Complexin vitroin vitrofar western blottingbiochemicalAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinterologs mappinginteraction prediction | FSW = 0.1293
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G57015 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0094
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G10330 | PredictedReconstituted ComplexReconstituted ComplexAffinity Capture-WesternCo-crystal StructureSynthetic Lethalityinteraction prediction | FSW = 0.1221
| Unknown | TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2) |
AT1G03930 | PredictedAffinity Capture-MSReconstituted Complex | FSW = 0.0089
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G17020 | PredictedCo-purificationReconstituted Complex | FSW = 0.1019
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.1233
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT4G10670 | PredictedAffinity Capture-MS | FSW = 0.1089
| Unknown | GTC2 |
AT5G09860 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0948
| Unknown | NUCLEAR MATRIX PROTEIN-RELATED |
AT4G20810 | PredictedCo-purificationReconstituted Complex | FSW = 0.0877
| Unknown | TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN |
AT1G17680 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0598
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT4G31720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0655
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G41630 | PredictedReconstituted ComplexCo-crystal StructureAffinity Capture-WesternCo-crystal StructureReconstituted ComplexSynthetic Lethality | FSW = 0.1130
| Unknown | TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING |
AT1G18450 | Predictedin vitroin vivoCo-expression | FSW = 0.0202
| Unknown | ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G32420 | Predictedtwo hybridin vivoin vitroCo-expression | FSW = 0.0068
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
AT3G19840 | Predictedin vivoin vivoin vitroin vitroReconstituted ComplexCo-expression | FSW = 0.0050
| Unknown | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT3G54610 | PredictedAffinity Capture-Western | FSW = 0.1140
| Unknown | GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT4G21010 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0930
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT4G20340 | PredictedCo-purificationReconstituted Complex | FSW = 0.1310
| Unknown | RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G30860 | PredictedAffinity Capture-Western | FSW = 0.0148
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
AT3G13445 | PredictedReconstituted ComplexCo-purificationReconstituted ComplexColocalization | FSW = 0.0489
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G16980 | Predictedtwo hybridCo-purificationCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2893
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT5G08190 | PredictedSynthetic Rescue | FSW = 0.0842
| Unknown | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G35910 | PredictedAffinity Capture-MS | FSW = 0.0707
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT2G33610 | Predictedin vitroin vivoCo-expression | FSW = 0.0119
| Unknown | ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING |
AT5G07630 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | LIPID TRANSPORTER |
AT1G63210 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.1222
| Unknown | RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR |
AT1G18340 | PredictedCo-purification | FSW = 0.1079
| Unknown | BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED |
AT1G55520 | PredictedReconstituted ComplexCo-purificationReconstituted ComplexCo-crystal StructureColocalization | FSW = 0.0954
| Unknown | TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING |
AT2G38560 | PredictedSynthetic LethalityPhenotypic Enhancementinterologs mappingAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal StructureSynthetic Lethalityinteraction predictionEnriched domain pairCo-expression | FSW = 0.2732
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT2G18760 | Predictedin vitro | FSW = 0.0925
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G05055 | Predictedbiochemical | FSW = 0.1006
| Unknown | GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT1G65440 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.0738
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G15430 | PredictedCo-purificationCo-purificationAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternCo-crystal StructureCo-purificationco-fractionationCo-fractionationfar western blottingReconstituted Complex | FSW = 0.2032
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defectsynthetic growth defectAffinity Capture-Westerninteraction prediction | FSW = 0.1958
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | Predictedsynthetic growth defectAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernsynthetic growth defect | FSW = 0.2391
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT5G09920 | PredictedCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-crystal StructureCo-purificationinteraction prediction | FSW = 0.2519
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT3G06010 | Predictedin vitroCo-purificationCo-purificationCo-purificationin vitroAffinity Capture-Westernin vivoCo-expression | FSW = 0.0496
| Unknown | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G55750 | Predictedin vitroin vivo | FSW = 0.0629
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT2G06210 | PredictedAffinity Capture-WesternSynthetic Lethalityinteraction predictionCo-expression | FSW = 0.1581
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT5G18620 | PredictedPhenotypic Enhancement | FSW = 0.0219
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT3G17590 | PredictedCo-purificationco-fractionationCo-fractionationCo-purification | FSW = 0.0503
| Unknown | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT5G66010 | Predictedin vivo | FSW = 0.0152
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G18040 | Predictedbiochemicalbiochemicalbiochemicalbiochemicalbiochemicalbiochemicalfar western blottinginterologs mappinginteraction prediction | FSW = 0.0748
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G75510 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSin vitro | FSW = 0.2952
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT1G59900 | PredictedPhenotypic Enhancement | FSW = 0.0116
| Unknown | AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
AT3G05710 | PredictedAffinity Capture-Western | FSW = 0.0052
| Unknown | SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR |
AT3G52090 | PredictedCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted Complexfar western blottinginteraction predictionEnriched domain pairCo-expression | FSW = 0.2493
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G19910 | PredictedSynthetic Lethality | FSW = 0.1451
| Unknown | SOH1 FAMILY PROTEIN |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridCo-crystal StructureAffinity Capture-MSAffinity Capture-Westernfar western blottinginteraction prediction | FSW = 0.1250
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G15400 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-crystal Structureco-fractionationCo-fractionationCo-purificationEnriched domain pair | FSW = 0.2802
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G16190 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0378
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT4G21710 | PredictedPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementCo-purificationCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSfar western blottingAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSCo-purificationPhenotypic SuppressionPhenotypic SuppressionPhenotypic EnhancementPhenotypic EnhancementReconstituted Complexinteraction predictionEnriched domain pairCo-expression | FSW = 0.3915
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G59180 | PredictedCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationfar western blottingReconstituted Complexinteraction prediction | FSW = 0.2723
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT5G23880 | PredictedReconstituted Complextwo hybridinteraction prediction | FSW = 0.0501
| Unknown | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING |
AT5G51660 | Predictedtwo hybridtwo hybridReconstituted Complexinteraction prediction | FSW = 0.0573
| Unknown | CPSF160 NUCLEIC ACID BINDING |
AT5G38470 | PredictedAffinity Capture-Western | FSW = 0.0353
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G20000 | PredictedCo-purificationReconstituted Complex | FSW = 0.0513
| Unknown | TAF11B (TBP-ASSOCIATED FACTOR 11B) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT2G15790 | Predictedtwo hybridin vitroin vivo | FSW = 0.0081
| Unknown | SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G17900 | PredictedAffinity Capture-Western | FSW = 0.0109
| Unknown | SDG37 ZINC ION BINDING |
AT4G20280 | PredictedCo-purificationReconstituted Complex | FSW = 0.0269
| Unknown | TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT3G12980 | Predictedco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.0372
| Unknown | HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT3G52270 | Predictedin vitro | FSW = 0.0681
| Unknown | ATP BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR |
AT4G20330 | PredictedAffinity Capture-Westernfar western blottingReconstituted Complexinteraction prediction | FSW = 0.1072
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT5G41910 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1661
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT5G46410 | Predictedbiochemical | FSW = 0.0128
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT5G48630 | Predictedin vivoin vitroSynthetic Rescue | FSW = 0.0390
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G51940 | Predictedin vitroAffinity Capture-MSAffinity Capture-Westernfar western blottingCo-purificationAffinity Capture-MSAffinity Capture-MSinterologs mappingSynthetic LethalitySynthetic Lethalityinterologs mappingCo-crystal StructureAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSSynthetic LethalityAffinity Capture-MSCo-crystal Structureinterologs mappingCo-purificationinteraction predictionEnriched domain pairCo-expression | FSW = 0.2005
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63610 | PredictedSynthetic RescueSynthetic Rescuein vivoin vivoin vitrobiochemicalbiochemicalbiochemicalco-fractionationCo-fractionationin vivoAffinity Capture-Westernco-fractionationCo-fractionationin vitrobiochemicalSynthetic Rescue | FSW = 0.1177
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G45190 | Predictedin vitroin vitro | FSW = 0.0069
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G58003 | PredictedAffinity Capture-WesternReconstituted ComplexCo-purificationReconstituted ComplexAffinity Capture-WesternProtein-peptideSynthetic LethalitybiochemicalAffinity Capture-MS | FSW = 0.2877
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G61780 | Predictedin vitroin vivo | FSW = 0.0499
| Unknown | TUDOR DOMAIN-CONTAINING PROTEIN / NUCLEASE FAMILY PROTEIN |
AT1G13870 | Predictedco-fractionationCo-fractionationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0645
| Unknown | DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING |
AT1G15780 | PredictedReconstituted ComplexCo-purification | FSW = 0.1928
| Unknown | UNKNOWN PROTEIN |
AT1G17760 | Predictedtwo hybridReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternCo-expression | FSW = 0.0437
| Unknown | CSTF77 PROTEIN BINDING |
AT1G32130 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1405
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G49540 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1405
| Unknown | NUCLEOTIDE BINDING |
AT1G54250 | Predictedtwo hybridCo-crystal StructureCo-crystal StructureAffinity Capture-Westernfar western blottingAffinity Capture-MSAffinity Capture-WesternCo-purificationAffinity Capture-MSReconstituted Complexinteraction predictionEnriched domain pair | FSW = 0.1932
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT1G79730 | PredictedAffinity Capture-WesternAffinity Capture-MSSynthetic Lethalityinteraction prediction | FSW = 0.2183
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G02760 | PredictedAffinity Capture-Western | FSW = 0.0836
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44150 | PredictedReconstituted ComplexProtein-peptideAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1607
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G09100 | Predictedinteraction predictionSynthetic LethalitySynthetic LethalityReconstituted ComplexProtein-peptideAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingCo-expression | FSW = 0.0917
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G20650 | PredictedReconstituted ComplexAffinity Capture-Westerninteraction prediction | FSW = 0.0243
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G22320 | Predictedtwo hybridSynthetic LethalityCo-purificationCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complextwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purificationsynthetic growth defectfar western blottingReconstituted Complexinteraction predictionEnriched domain pairCo-expression | FSW = 0.1992
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G22590 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defectinteraction prediction | FSW = 0.2038
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G04885 | Predictedtwo hybridtwo hybridReconstituted Complextwo hybridsynthetic growth defectProtein-peptide | FSW = 0.0418
| Unknown | PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING |
AT1G03530 | Predictedtwo hybrid | FSW = 0.0107
| Unknown | NAF1 (NUCLEAR ASSEMBLY FACTOR 1) |
AT1G16800 | Predictedtwo hybridsynthetic growth defectAffinity Capture-Western | FSW = 0.0725
| Unknown | TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.0795
| Unknown | SNL5 (SIN3-LIKE 5) |
AT1G61040 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1805
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT2G06040 | PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK) |
AT2G07690 | PredictedSynthetic Rescue | FSW = 0.0093
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT2G18600 | PredictedPhenotypic Enhancement | FSW = 0.0461
| Unknown | RUB1-CONJUGATING ENZYME PUTATIVE |
AT2G28360 | PredictedPhenotypic Enhancement | FSW = 0.0280
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G28390 | PredictedPhenotypic Enhancement | FSW = 0.0265
| Unknown | SAND FAMILY PROTEIN |
AT2G43790 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0197
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G24030 | PredictedPhenotypic Enhancement | FSW = 0.0239
| Unknown | HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN |
AT3G25100 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT3G58560 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1034
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G01560 | Predictedbiochemical | FSW = 0.0020
| Unknown | MEE49 (MATERNAL EFFECT EMBRYO ARREST 49) |
AT4G25120 | PredictedPhenotypic Enhancement | FSW = 0.0264
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G27180 | PredictedPhenotypic Enhancement | FSW = 0.0187
| Unknown | ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR |
AT4G33100 | PredictedPhenotypic Enhancement | FSW = 0.0478
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT4G33240 | PredictedPhenotypic Enhancement | FSW = 0.0639
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G03220 | PredictedAffinity Capture-Western | FSW = 0.0739
| Unknown | TRANSCRIPTIONAL CO-ACTIVATOR-RELATED |
AT5G09620 | Predictedbiochemical | FSW = 0.0509
| Unknown | OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN |
AT5G10270 | Predictedbiochemicalbiochemical | FSW = 0.1363
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G10790 | PredictedAffinity Capture-Western | FSW = 0.0658
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G13680 | PredictedCo-purificationco-fractionationCo-fractionationco-fractionationCo-fractionationCo-purificationinteraction prediction | FSW = 0.1995
| Unknown | ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR |
AT5G15400 | PredictedPhenotypic Enhancement | FSW = 0.0153
| Unknown | U-BOX DOMAIN-CONTAINING PROTEIN |
AT5G41340 | PredictedPhenotypic Enhancement | FSW = 0.0367
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0670
| Unknown | ORMDL FAMILY PROTEIN |
AT5G63670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.2447
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G65180 | PredictedAffinity Capture-MSProtein-peptideAffinity Capture-MS | FSW = 0.0544
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT5G41010 | PredictedCo-crystal Structurefar western blottingAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2070
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G28210 | Predictedtwo hybridtwo hybrid | FSW = 0.0245
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT5G08565 | PredictedAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.2422
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT3G26990 | PredictedAffinity Capture-MSAffinity Capture-MSProtein-peptide | FSW = 0.0397
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK) |
AT1G11475 | PredictedAffinity Capture-MSCo-crystal Structuretwo hybrid | FSW = 0.1197
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G04630 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mappinginterologs mappingCo-crystal StructureAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-crystal Structureinterologs mappingEnriched domain pairCo-expression | FSW = 0.1551
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G54440 | PredictedAffinity Capture-MS | FSW = 0.0705
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
AT3G05670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0679
| Unknown | PHD FINGER FAMILY PROTEIN |
AT1G14400 | PredictedAffinity Capture-Western | FSW = 0.0664
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G40490 | PredictedAffinity Capture-Western | FSW = 0.0164
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G21350 | PredictedAffinity Capture-WesternbiochemicalCo-purification | FSW = 0.0770
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT4G04780 | Predictedin vitroin vivo | FSW = 0.0405
| Unknown | MED21 (MEDIATOR 21) |
AT1G16710 | Predictedin vitroin vivo | FSW = 0.0162
| Unknown | HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR |
AT4G21070 | Predictedin vivo | FSW = 0.0243
| Unknown | ATBRCA1 UBIQUITIN-PROTEIN LIGASE |
AT4G15475 | PredictedPhenotypic Enhancement | FSW = 0.0315
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT1G20320 | PredictedProtein-peptideSynthetic Lethality | FSW = 0.1705
| Unknown | NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN |
AT1G66500 | Predictedtwo hybridtwo hybridProtein-peptideReconstituted Complexsynthetic growth defecttwo hybridinteraction prediction | FSW = 0.0461
| Unknown | ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN |
AT1G44910 | PredictedReconstituted ComplexCo-expression | FSW = 0.0068
| Unknown | PROTEIN BINDING |
AT1G50370 | PredictedSynthetic Lethality | FSW = 0.0363
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE |
AT1G54390 | Predictedtwo hybrid | FSW = 0.0292
| Unknown | PHD FINGER PROTEIN-RELATED |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454