Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35800 - ( NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA binding / DNA-directed RNA polymerase )

144 Proteins interacs with AT4G35800
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G21670

Experimental

biochemical

FSW = 0.0074

Class B:

plastid

nucleus

Class D:

nucleus (p = 0.78)

CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) DOUBLE-STRANDED RNA BINDING / NUCLEOTIDE PHOSPHATASE
AT1G53720

Experimental

pull down

two hybrid

Reconstituted Complex

Affinity Capture-Western

affinity technology

in vitro

coimmunoprecipitation

FSW = 0.0035

Unknown

CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT3G22680

Experimental

Affinity Capture-Western

FSW = 0.0071

Unknown

UNKNOWN PROTEIN
AT4G12610

Predicted

Synthetic Rescue

Synthetic Rescue

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Reconstituted Complex

co-fractionation

Co-fractionation

Affinity Capture-MS

Phenotypic Suppression

Synthetic Rescue

FSW = 0.2822

Class C:

plastid

TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT1G73820

Predicted

Protein-peptide

Synthetic Rescue

FSW = 0.1060

Class C:

plastid

SSU72-LIKE FAMILY PROTEIN
AT2G06510

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.0242

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
AT3G19980

Predicted

Synthetic Lethality

FSW = 0.0256

Unknown

ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G48750

Predicted

Synthetic Lethality

Colocalization

FSW = 0.0436

Unknown

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G47010

Predicted

in vitro

FSW = 0.0052

Unknown

LBA1 (LOW-LEVEL BETA-AMYLASE 1) ATP BINDING / DNA BINDING / RNA HELICASE/ HYDROLASE
AT3G18524

Predicted

Phenotypic Enhancement

FSW = 0.0172

Unknown

MSH2 (MUTS HOMOLOG 2) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT2G30110

Predicted

biochemical

FSW = 0.0105

Unknown

ATUBA1 UBIQUITIN ACTIVATING ENZYME/ UBIQUITIN-PROTEIN LIGASE
AT2G18040

Predicted

two hybrid

two hybrid

Synthetic Lethality

Synthetic Lethality

Reconstituted Complex

Reconstituted Complex

in vitro

in vitro

far western blotting

biochemical

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interaction prediction

FSW = 0.1293

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G57015

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0094

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G10330

Predicted

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Co-crystal Structure

Synthetic Lethality

interaction prediction

FSW = 0.1221

Unknown

TRANSCRIPTION INITIATION FACTOR IIB-2 / GENERAL TRANSCRIPTION FACTOR TFIIB-2 (TFIIB2)
AT1G03930

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0089

Unknown

ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE
AT4G17020

Predicted

Co-purification

Reconstituted Complex

FSW = 0.1019

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.1233

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT4G10670

Predicted

Affinity Capture-MS

FSW = 0.1089

Unknown

GTC2
AT5G09860

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0948

Unknown

NUCLEAR MATRIX PROTEIN-RELATED
AT4G20810

Predicted

Co-purification

Reconstituted Complex

FSW = 0.0877

Unknown

TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT1G17680

Predicted

Reconstituted Complex

Affinity Capture-Western

FSW = 0.0598

Unknown

TRANSCRIPTION FACTOR-RELATED
AT4G31720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0655

Unknown

TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT2G41630

Predicted

Reconstituted Complex

Co-crystal Structure

Affinity Capture-Western

Co-crystal Structure

Reconstituted Complex

Synthetic Lethality

FSW = 0.1130

Unknown

TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G18450

Predicted

in vitro

in vivo

Co-expression

FSW = 0.0202

Unknown

ATARP4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT4G32420

Predicted

two hybrid

in vivo

in vitro

Co-expression

FSW = 0.0068

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN
AT3G19840

Predicted

in vivo

in vivo

in vitro

in vitro

Reconstituted Complex

Co-expression

FSW = 0.0050

Unknown

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT3G54610

Predicted

Affinity Capture-Western

FSW = 0.1140

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT4G21010

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0930

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT4G20340

Predicted

Co-purification

Reconstituted Complex

FSW = 0.1310

Unknown

RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT4G30860

Predicted

Affinity Capture-Western

FSW = 0.0148

Unknown

SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE
AT3G13445

Predicted

Reconstituted Complex

Co-purification

Reconstituted Complex

Colocalization

FSW = 0.0489

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G16980

Predicted

two hybrid

Co-purification

Co-crystal Structure

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2893

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT5G08190

Predicted

Synthetic Rescue

FSW = 0.0842

Unknown

NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR
AT5G35910

Predicted

Affinity Capture-MS

FSW = 0.0707

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT2G33610

Predicted

in vitro

in vivo

Co-expression

FSW = 0.0119

Unknown

ATSWI3B (SWITCH SUBUNIT 3) DNA BINDING
AT5G07630

Predicted

Affinity Capture-MS

FSW = 0.0255

Unknown

LIPID TRANSPORTER
AT1G63210

Predicted

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.1222

Unknown

RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / PROTEIN BINDING / TRANSCRIPTION ELONGATION REGULATOR
AT1G18340

Predicted

Co-purification

FSW = 0.1079

Unknown

BASAL TRANSCRIPTION FACTOR COMPLEX SUBUNIT-RELATED
AT1G55520

Predicted

Reconstituted Complex

Co-purification

Reconstituted Complex

Co-crystal Structure

Colocalization

FSW = 0.0954

Unknown

TBP2 (TATA BINDING PROTEIN 2) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TATA-BINDING PROTEIN BINDING
AT2G38560

Predicted

Synthetic Lethality

Phenotypic Enhancement

interologs mapping

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-crystal Structure

Synthetic Lethality

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2732

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT2G18760

Predicted

in vitro

FSW = 0.0925

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G05055

Predicted

biochemical

FSW = 0.1006

Unknown

GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2) GENERAL RNA POLYMERASE II TRANSCRIPTION FACTOR
AT1G65440

Predicted

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.0738

Unknown

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G15430

Predicted

Co-purification

Co-purification

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Co-crystal Structure

Co-purification

co-fractionation

Co-fractionation

far western blotting

Reconstituted Complex

FSW = 0.2032

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G08350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

synthetic growth defect

Affinity Capture-Western

interaction prediction

FSW = 0.1958

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

synthetic growth defect

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

synthetic growth defect

FSW = 0.2391

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT5G09920

Predicted

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-crystal Structure

Co-purification

interaction prediction

FSW = 0.2519

Unknown

NRPB4 DNA-DIRECTED RNA POLYMERASE
AT3G06010

Predicted

in vitro

Co-purification

Co-purification

Co-purification

in vitro

Affinity Capture-Western

in vivo

Co-expression

FSW = 0.0496

Unknown

ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G55750

Predicted

in vitro

in vivo

FSW = 0.0629

Unknown

TRANSCRIPTION FACTOR-RELATED
AT2G06210

Predicted

Affinity Capture-Western

Synthetic Lethality

interaction prediction

Co-expression

FSW = 0.1581

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT5G18620

Predicted

Phenotypic Enhancement

FSW = 0.0219

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT3G17590

Predicted

Co-purification

co-fractionation

Co-fractionation

Co-purification

FSW = 0.0503

Unknown

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT5G66010

Predicted

in vivo

FSW = 0.0152

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G18040

Predicted

biochemical

biochemical

biochemical

biochemical

biochemical

biochemical

far western blotting

interologs mapping

interaction prediction

FSW = 0.0748

Unknown

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT1G75510

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

in vitro

FSW = 0.2952

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT1G59900

Predicted

Phenotypic Enhancement

FSW = 0.0116

Unknown

AT-E1 ALPHA OXIDOREDUCTASE ACTING ON THE ALDEHYDE OR OXO GROUP OF DONORS DISULFIDE AS ACCEPTOR / PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING)
AT3G05710

Predicted

Affinity Capture-Western

FSW = 0.0052

Unknown

SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT3G52090

Predicted

Co-crystal Structure

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

far western blotting

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2493

Unknown

NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G19910

Predicted

Synthetic Lethality

FSW = 0.1451

Unknown

SOH1 FAMILY PROTEIN
AT1G61700

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Co-crystal Structure

Affinity Capture-MS

Affinity Capture-Western

far western blotting

interaction prediction

FSW = 0.1250

Unknown

DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10)
AT2G15400

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-crystal Structure

co-fractionation

Co-fractionation

Co-purification

Enriched domain pair

FSW = 0.2802

Unknown

NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G16190

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0378

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT4G21710

Predicted

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

Co-purification

Co-crystal Structure

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

far western blotting

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

Phenotypic Suppression

Phenotypic Suppression

Phenotypic Enhancement

Phenotypic Enhancement

Reconstituted Complex

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.3915

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G59180

Predicted

Co-crystal Structure

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Co-purification

far western blotting

Reconstituted Complex

interaction prediction

FSW = 0.2723

Unknown

NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT5G23880

Predicted

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.0501

Unknown

CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) DNA BINDING / PROTEIN BINDING
AT5G51660

Predicted

two hybrid

two hybrid

Reconstituted Complex

interaction prediction

FSW = 0.0573

Unknown

CPSF160 NUCLEIC ACID BINDING
AT5G38470

Predicted

Affinity Capture-Western

FSW = 0.0353

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT1G20000

Predicted

Co-purification

Reconstituted Complex

FSW = 0.0513

Unknown

TAF11B (TBP-ASSOCIATED FACTOR 11B) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT2G15790

Predicted

two hybrid

in vitro

in vivo

FSW = 0.0081

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G17900

Predicted

Affinity Capture-Western

FSW = 0.0109

Unknown

SDG37 ZINC ION BINDING
AT4G20280

Predicted

Co-purification

Reconstituted Complex

FSW = 0.0269

Unknown

TAF11 (TBP-ASSOCIATED FACTOR 11) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT3G12980

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

FSW = 0.0372

Unknown

HAC5 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G52270Predicted

in vitro

FSW = 0.0681

Unknown

ATP BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT4G20330

Predicted

Affinity Capture-Western

far western blotting

Reconstituted Complex

interaction prediction

FSW = 0.1072

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT5G41910

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1661

Unknown

RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED
AT5G46410

Predicted

biochemical

FSW = 0.0128

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT5G48630

Predicted

in vivo

in vitro

Synthetic Rescue

FSW = 0.0390

Unknown

CYCLIN FAMILY PROTEIN
AT5G51940

Predicted

in vitro

Affinity Capture-MS

Affinity Capture-Western

far western blotting

Co-purification

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

Synthetic Lethality

Synthetic Lethality

interologs mapping

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-MS

Co-crystal Structure

interologs mapping

Co-purification

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.2005

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G63610

Predicted

Synthetic Rescue

Synthetic Rescue

in vivo

in vivo

in vitro

biochemical

biochemical

biochemical

co-fractionation

Co-fractionation

in vivo

Affinity Capture-Western

co-fractionation

Co-fractionation

in vitro

biochemical

Synthetic Rescue

FSW = 0.1177

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G45190

Predicted

in vitro

in vitro

FSW = 0.0069

Unknown

CYCLIN FAMILY PROTEIN
AT5G58003

Predicted

Affinity Capture-Western

Reconstituted Complex

Co-purification

Reconstituted Complex

Affinity Capture-Western

Protein-peptide

Synthetic Lethality

biochemical

Affinity Capture-MS

FSW = 0.2877

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G61780

Predicted

in vitro

in vivo

FSW = 0.0499

Unknown

TUDOR DOMAIN-CONTAINING PROTEIN / NUCLEASE FAMILY PROTEIN
AT1G13870

Predicted

co-fractionation

Co-fractionation

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0645

Unknown

DRL1 (DEFORMED ROOTS AND LEAVES 1) CALMODULIN BINDING / PURINE NUCLEOTIDE BINDING
AT1G15780

Predicted

Reconstituted Complex

Co-purification

FSW = 0.1928

Unknown

UNKNOWN PROTEIN
AT1G17760

Predicted

two hybrid

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Co-expression

FSW = 0.0437

Unknown

CSTF77 PROTEIN BINDING
AT1G32130

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1405

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G49540

Predicted

Co-purification

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1405

Unknown

NUCLEOTIDE BINDING
AT1G54250

Predicted

two hybrid

Co-crystal Structure

Co-crystal Structure

Affinity Capture-Western

far western blotting

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Affinity Capture-MS

Reconstituted Complex

interaction prediction

Enriched domain pair

FSW = 0.1932

Unknown

NRPB8A DNA-DIRECTED RNA POLYMERASE
AT1G79730

Predicted

Affinity Capture-Western

Affinity Capture-MS

Synthetic Lethality

interaction prediction

FSW = 0.2183

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G02760

Predicted

Affinity Capture-Western

FSW = 0.0836

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44150

Predicted

Reconstituted Complex

Protein-peptide

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1607

Unknown

ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE
AT3G09100

Predicted

interaction prediction

Synthetic Lethality

Synthetic Lethality

Reconstituted Complex

Protein-peptide

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Co-expression

FSW = 0.0917

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G20650

Predicted

Reconstituted Complex

Affinity Capture-Western

interaction prediction

FSW = 0.0243

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G22320

Predicted

two hybrid

Synthetic Lethality

Co-purification

Co-crystal Structure

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

two hybrid

Affinity Capture-MS

Affinity Capture-Western

two hybrid

Affinity Capture-MS

Co-purification

synthetic growth defect

far western blotting

Reconstituted Complex

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1992

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G22590

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

synthetic growth defect

interaction prediction

FSW = 0.2038

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G04885

Predicted

two hybrid

two hybrid

Reconstituted Complex

two hybrid

synthetic growth defect

Protein-peptide

FSW = 0.0418

Unknown

PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT1G03530

Predicted

two hybrid

FSW = 0.0107

Unknown

NAF1 (NUCLEAR ASSEMBLY FACTOR 1)
AT1G16800

Predicted

two hybrid

synthetic growth defect

Affinity Capture-Western

FSW = 0.0725

Unknown

TRNA-SPLICING ENDONUCLEASE POSITIVE EFFECTOR-RELATED
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.0795

Unknown

SNL5 (SIN3-LIKE 5)
AT1G61040

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.1805

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT2G06040

Predicted

Phenotypic Enhancement

FSW = 0.0416

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G07690

Predicted

Synthetic Rescue

FSW = 0.0093

Unknown

MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN
AT2G18600

Predicted

Phenotypic Enhancement

FSW = 0.0461

Unknown

RUB1-CONJUGATING ENZYME PUTATIVE
AT2G28360

Predicted

Phenotypic Enhancement

FSW = 0.0280

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK)
AT2G28390

Predicted

Phenotypic Enhancement

FSW = 0.0265

Unknown

SAND FAMILY PROTEIN
AT2G43790

Predicted

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0197

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G24030

Predicted

Phenotypic Enhancement

FSW = 0.0239

Unknown

HYDROXYETHYLTHIAZOLE KINASE FAMILY PROTEIN
AT3G25100

Predicted

Affinity Capture-MS

FSW = 0.0403

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G58560

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1034

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G01560

Predicted

biochemical

FSW = 0.0020

Unknown

MEE49 (MATERNAL EFFECT EMBRYO ARREST 49)
AT4G25120Predicted

Phenotypic Enhancement

FSW = 0.0264

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT4G27180

Predicted

Phenotypic Enhancement

FSW = 0.0187

Unknown

ATK2 (ARABIDOPSIS THALIANA KINESIN 2) MICROTUBULE BINDING / MICROTUBULE MOTOR
AT4G33100

Predicted

Phenotypic Enhancement

FSW = 0.0478

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.0639

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G03220

Predicted

Affinity Capture-Western

FSW = 0.0739

Unknown

TRANSCRIPTIONAL CO-ACTIVATOR-RELATED
AT5G09620

Predicted

biochemical

FSW = 0.0509

Unknown

OCTICOSAPEPTIDE/PHOX/BEM1P (PB1) DOMAIN-CONTAINING PROTEIN
AT5G10270

Predicted

biochemical

biochemical

FSW = 0.1363

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10790

Predicted

Affinity Capture-Western

FSW = 0.0658

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G13680

Predicted

Co-purification

co-fractionation

Co-fractionation

co-fractionation

Co-fractionation

Co-purification

interaction prediction

FSW = 0.1995

Unknown

ABO1 (ABA-OVERLY SENSITIVE 1) TRANSCRIPTION ELONGATION REGULATOR
AT5G15400

Predicted

Phenotypic Enhancement

FSW = 0.0153

Unknown

U-BOX DOMAIN-CONTAINING PROTEIN
AT5G41340

Predicted

Phenotypic Enhancement

FSW = 0.0367

Unknown

UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE
AT5G42000

Predicted

Phenotypic Enhancement

FSW = 0.0670

Unknown

ORMDL FAMILY PROTEIN
AT5G63670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.2447

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT5G65180

Predicted

Affinity Capture-MS

Protein-peptide

Affinity Capture-MS

FSW = 0.0544

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G41010

Predicted

Co-crystal Structure

far western blotting

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.2070

Unknown

NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G28210

Predicted

two hybrid

two hybrid

FSW = 0.0245

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT5G08565

Predicted

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.2422

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING
AT3G26990

Predicted

Affinity Capture-MS

Affinity Capture-MS

Protein-peptide

FSW = 0.0397

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 815 BLAST HITS TO 806 PROTEINS IN 138 SPECIES ARCHAE - 0 BACTERIA - 10 METAZOA - 490 FUNGI - 159 PLANTS - 81 VIRUSES - 1 OTHER EUKARYOTES - 74 (SOURCE NCBI BLINK)
AT1G11475

Predicted

Affinity Capture-MS

Co-crystal Structure

two hybrid

FSW = 0.1197

Unknown

NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G04630

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

interologs mapping

interologs mapping

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-crystal Structure

interologs mapping

Enriched domain pair

Co-expression

FSW = 0.1551

Unknown

NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G54440

Predicted

Affinity Capture-MS

FSW = 0.0705

Unknown

3-5 EXONUCLEASE/ NUCLEIC ACID BINDING
AT3G05670

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0679

Unknown

PHD FINGER FAMILY PROTEIN
AT1G14400

Predicted

Affinity Capture-Western

FSW = 0.0664

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT5G40490

Predicted

Affinity Capture-Western

FSW = 0.0164

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G21350

Predicted

Affinity Capture-Western

biochemical

Co-purification

FSW = 0.0770

Unknown

RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED
AT4G04780

Predicted

in vitro

in vivo

FSW = 0.0405

Unknown

MED21 (MEDIATOR 21)
AT1G16710

Predicted

in vitro

in vivo

FSW = 0.0162

Unknown

HAC12 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 12) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT4G21070

Predicted

in vivo

FSW = 0.0243

Unknown

ATBRCA1 UBIQUITIN-PROTEIN LIGASE
AT4G15475

Predicted

Phenotypic Enhancement

FSW = 0.0315

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT1G20320

Predicted

Protein-peptide

Synthetic Lethality

FSW = 0.1705

Unknown

NLI INTERACTING FACTOR (NIF) FAMILY PROTEIN
AT1G66500

Predicted

two hybrid

two hybrid

Protein-peptide

Reconstituted Complex

synthetic growth defect

two hybrid

interaction prediction

FSW = 0.0461

Unknown

ZINC FINGER (C2H2-TYPE) FAMILY PROTEIN
AT1G44910

Predicted

Reconstituted Complex

Co-expression

FSW = 0.0068

Unknown

PROTEIN BINDING
AT1G50370

Predicted

Synthetic Lethality

FSW = 0.0363

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE PUTATIVE
AT1G54390

Predicted

two hybrid

FSW = 0.0292

Unknown

PHD FINGER PROTEIN-RELATED

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454