Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35830 - ( aconitate hydratase cytoplasmic / citrate hydro-lyase / aconitase (ACO) )
26 Proteins interacs with AT4G35830Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G43810 | PredictedAffinity Capture-MS | FSW = 0.0055
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT4G33090 | PredictedAffinity Capture-MS | FSW = 0.0103
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT4G38680 | Predictedin vivoin vitrotwo hybrid | FSW = 0.0106
| Class C:plasma membrane | GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT2G05710 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.4476
| Class C:mitochondrion | ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE |
AT4G26970 | PredictedEnriched domain pairGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1237
| Class C:mitochondrion | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT2G06510 | PredictedAffinity Capture-MS | FSW = 0.0651
| Unknown | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
ATCG00790 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT2G40360 | PredictedAffinity Capture-MS | FSW = 0.0229
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G57015 | PredictedAffinity Capture-MS | FSW = 0.0432
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03190 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT2G18760 | PredictedAffinity Capture-MS | FSW = 0.0590
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G25340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0078
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G40820 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G20570 | Predictedtwo hybrid | FSW = 0.0097
| Unknown | RBX1 (RING-BOX 1) PROTEIN BINDING |
AT1G04200 | Predictedtwo hybrid | FSW = 0.0394
| Unknown | UNKNOWN PROTEIN |
AT3G05000 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN |
AT4G18465 | Predictedtwo hybrid | FSW = 0.0221
| Unknown | RNA HELICASE PUTATIVE |
AT5G17290 | Predictedtwo hybrid | FSW = 0.0325
| Unknown | APG5 (AUTOPHAGY 5) TRANSPORTER |
AT5G63770 | Predictedtwo hybrid | FSW = 0.0356
| Unknown | ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE |
AT2G33240 | PredictedAffinity Capture-MS | FSW = 0.0522
| Unknown | XID MOTOR/ PROTEIN BINDING |
AT1G63160 | PredictedAffinity Capture-MS | FSW = 0.0530
| Unknown | REPLICATION FACTOR C 40 KDA PUTATIVE |
AT5G02880 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | UPL4 UBIQUITIN-PROTEIN LIGASE |
AT5G10260 | PredictedAffinity Capture-MS | FSW = 0.0148
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G55310 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I |
AT5G57160 | PredictedAffinity Capture-MS | FSW = 0.0822
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G57950 | PredictedAffinity Capture-MS | FSW = 0.0860
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454