Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35830 - ( aconitate hydratase cytoplasmic / citrate hydro-lyase / aconitase (ACO) )

26 Proteins interacs with AT4G35830
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G43810

Predicted

Affinity Capture-MS

FSW = 0.0055

Class C:

plasma membrane

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0103

Class C:

plasma membrane

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G38680

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0106

Class C:

plasma membrane

GRP2 (GLYCINE RICH PROTEIN 2) DOUBLE-STRANDED DNA BINDING / MRNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING
AT2G05710

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.4476

Class C:

mitochondrion

ACONITATE HYDRATASE CYTOPLASMIC PUTATIVE / CITRATE HYDRO-LYASE/ACONITASE PUTATIVE
AT4G26970

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1237

Class C:

mitochondrion

ACONITATE HYDRATASE/ COPPER ION BINDING
AT2G06510

Predicted

Affinity Capture-MS

FSW = 0.0651

Unknown

RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING
ATCG00790Predicted

Affinity Capture-MS

FSW = 0.0149

Unknown

CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT
AT2G40360

Predicted

Affinity Capture-MS

FSW = 0.0229

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G57015

Predicted

Affinity Capture-MS

FSW = 0.0432

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G03190

Predicted

Affinity Capture-MS

FSW = 0.0420

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT2G18760

Predicted

Affinity Capture-MS

FSW = 0.0590

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G25340

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0078

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT5G40820

Predicted

Affinity Capture-MS

FSW = 0.0473

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT5G20570

Predicted

two hybrid

FSW = 0.0097

Unknown

RBX1 (RING-BOX 1) PROTEIN BINDING
AT1G04200

Predicted

two hybrid

FSW = 0.0394

Unknown

UNKNOWN PROTEIN
AT3G05000

Predicted

two hybrid

FSW = 0.0158

Unknown

TRANSPORT PROTEIN PARTICLE (TRAPP) COMPONENT BET3 FAMILY PROTEIN
AT4G18465Predicted

two hybrid

FSW = 0.0221

Unknown

RNA HELICASE PUTATIVE
AT5G17290

Predicted

two hybrid

FSW = 0.0325

Unknown

APG5 (AUTOPHAGY 5) TRANSPORTER
AT5G63770

Predicted

two hybrid

FSW = 0.0356

Unknown

ATDGK2 (DIACYLGLYCEROL KINASE 2) DIACYLGLYCEROL KINASE
AT2G33240Predicted

Affinity Capture-MS

FSW = 0.0522

Unknown

XID MOTOR/ PROTEIN BINDING
AT1G63160

Predicted

Affinity Capture-MS

FSW = 0.0530

Unknown

REPLICATION FACTOR C 40 KDA PUTATIVE
AT5G02880

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

UPL4 UBIQUITIN-PROTEIN LIGASE
AT5G10260

Predicted

Affinity Capture-MS

FSW = 0.0148

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G55310

Predicted

Affinity Capture-MS

FSW = 0.0171

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G57160

Predicted

Affinity Capture-MS

FSW = 0.0822

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G57950

Predicted

Affinity Capture-MS

FSW = 0.0860

Unknown

26S PROTEASOME REGULATORY SUBUNIT PUTATIVE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454