Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G35950 - ( ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP binding )
26 Proteins interacs with AT4G35950| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G20090
   | Experimental | FSW = 0.1698
| Class A:plasma membraneClass B:cytoskeletonClass D:cytosol (p = 0.67) | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT2G44690
| Experimental | FSW = 0.3674
| Class A:plasma membraneClass D:plastid (p = 0.78)cytosol (p = 0.67) | ARAC9 GTP BINDING |
| AT2G38440
| Experimental | FSW = 0.1645
| Class A:plasma membrane | SCAR2 (SCAR HOMOLOG 2) |
| AT5G01730
| Experimental | FSW = 0.1714
| Class B:plastidplasma membrane | ATSCAR4 |
| AT2G34150
| Experimental | FSW = 0.1142
| Unknown | WAVE1 ACTIN MONOMER BINDING |
| AT1G21980
| Experimentalpull downAffinity Capture-MS | FSW = 0.0552
| Unknown | ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ACTIN FILAMENT BINDING / ACTIN MONOMER BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE |
| AT2G33120
| Predictedinterologs mapping | FSW = 0.0073
| Class C:plasma membrane | SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) |
| AT2G37270
| PredictedAffinity Capture-WesternAffinity Capture-WesternbiochemicalAffinity Capture-MStwo hybridPhenotypic Suppression | FSW = 0.0145
| Class C:plasma membrane | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT5G62880
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1875
| Class C:plasma membrane | ARAC10 GTP BINDING |
| AT1G75840
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1930
| Class C:plasma membrane | ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE |
| AT2G14120
| Predictedfluorescence acceptor donor pairReconstituted Complex | FSW = 0.0351
| Class C:plasma membrane | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
| AT4G28950
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1633
| Class C:plasma membrane | ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING |
| AT4G35020
| PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.1481
| Class C:plasma membrane | ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE |
| AT5G45970
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1893
| Class C:plasma membrane | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
| AT3G48040
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.4246
| Class C:plasma membrane | ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE |
| AT5G15200
| Predictedbiochemicalfluorescence acceptor donor pairReconstituted Complex | FSW = 0.0306
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9B) |
| AT4G33650
| Predictedbiochemical | FSW = 0.0544
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
| AT3G55400
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0279
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT1G80190
| Predictedinterologs mapping | FSW = 0.0300
| Unknown | PSF1 (PARTNER OF SLD FIVE 1) |
| AT2G44900
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1563
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / F-BOX FAMILY PROTEIN |
| AT3G51300
| PredictedAffinity Capture-MSGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2172
| Unknown | ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING |
| AT2G17800
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1721
| Unknown | ARAC1 GTP BINDING |
| AT2G22480
| PredictedAffinity Capture-MS | FSW = 0.0135
| Unknown | PFK5 (PHOSPHOFRUCTOKINASE 5) 6-PHOSPHOFRUCTOKINASE |
| AT2G47090
| Predictedinterologs mapping | FSW = 0.0130
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
| AT1G07340
| Predictedinterologs mapping | FSW = 0.0405
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT4G37660
| PredictedAffinity Capture-MS | FSW = 0.1488
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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