Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36130 - ( 60S ribosomal protein L8 (RPL8C) )
37 Proteins interacs with AT4G36130Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G18020 | PredictedEnriched domain pairGene fusion methodPhylogenetic profile method | FSW = 0.0481
| Class C:vacuoleplasma membrane | EMB2296 (EMBRYO DEFECTIVE 2296) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G08710 | PredictedPhenotypic Enhancement | FSW = 0.0180
| Class C:vacuoleplasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
AT1G33140 | PredictedAffinity Capture-WesternPhenotypic Enhancementinterologs mapping | FSW = 0.0655
| Class C:vacuole | PGY2 (PIGGYBACK2) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G45200 | PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.0792
| Class C:vacuole | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G13080 | Predictedinterologs mapping | FSW = 0.0408
| Class C:vacuole | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0278
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10450 | Predictedtwo hybrid | FSW = 0.0204
| Class C:plasma membranecytosol | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT3G51190 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.0454
| Class C:plasma membranecytosol | STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G16030 | PredictedPhenotypic Enhancement | FSW = 0.0594
| Class C:plasma membrane | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G76810 | Predictedinteraction prediction | FSW = 0.0160
| Class C:plasma membrane | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 FAMILY PROTEIN / EIF-2 FAMILY PROTEIN |
AT1G64230 | PredictedPhenotypic Enhancement | FSW = 0.0258
| Class C:plasma membrane | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G50480 | Predictedinteraction prediction | FSW = 0.0182
| Class C:plasma membrane | THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE) ATP BINDING / COPPER ION BINDING / FORMATE-TETRAHYDROFOLATE LIGASE |
AT5G47100 | Predictedinterologs mapping | FSW = 0.0317
| Class C:plasma membrane | CBL9 CALCIUM ION BINDING |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.0456
| Class C:plasma membrane | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT3G45770 | PredictedPhenotypic Enhancement | FSW = 0.1012
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G55920 | PredictedPhenotypic Suppression | FSW = 0.0419
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.0188
| Unknown | DDL (DAWDLE) |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0246
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G19660 | Predictedinterologs mapping | FSW = 0.0530
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT3G57050 | PredictedAffinity Capture-WesternAffinity Capture-Westerninterologs mapping | FSW = 0.0779
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT5G53480 | Predictedinterologs mapping | FSW = 0.0381
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G07050 | Predictedinteraction prediction | FSW = 0.0263
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G10060 | PredictedPhenotypic Enhancement | FSW = 0.0218
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT2G14610 | Predictedinterologs mapping | FSW = 0.0779
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT1G50920 | Predictedinteraction prediction | FSW = 0.0468
| Unknown | GTP-BINDING PROTEIN-RELATED |
AT4G00660 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G34340 | PredictedAffinity Capture-Western | FSW = 0.0597
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G58340 | Predictedtwo hybrid | FSW = 0.0952
| Unknown | ZF14 ANTIPORTER/ DRUG TRANSPORTER/ TRANSPORTER |
AT2G28360 | Predictedtwo hybrid | FSW = 0.0354
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SIT4 PHOSPHATASE-ASSOCIATED PROTEIN (INTERPROIPR007587) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN (TAIRAT1G079901) HAS 1431 BLAST HITS TO 1107 PROTEINS IN 182 SPECIES ARCHAE - 2 BACTERIA - 108 METAZOA - 552 FUNGI - 305 PLANTS - 89 VIRUSES - 18 OTHER EUKARYOTES - 357 (SOURCE NCBI BLINK) |
AT2G31500 | PredictedPhenotypic Enhancement | FSW = 0.1172
| Unknown | CPK24 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G61670 | PredictedPhenotypic Suppression | FSW = 0.0912
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0368
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT5G38110 | PredictedPhenotypic Enhancement | FSW = 0.0960
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G14520 | Predictedinteraction prediction | FSW = 0.0306
| Unknown | PESCADILLO-RELATED |
AT2G27200 | Predictedinteraction prediction | FSW = 0.0244
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G75660 | Predictedinteraction prediction | FSW = 0.0303
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT1G55150 | Predictedinteraction prediction | FSW = 0.0169
| Unknown | DEAD BOX RNA HELICASE PUTATIVE (RH20) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454