Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36480 - ( ATLCB1 (LONG-CHAIN BASE1) protein binding / serine C-palmitoyltransferase )
17 Proteins interacs with AT4G36480Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G23670 | Predictedin vivoin vitroAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complexinteraction prediction | FSW = 0.1318
| Class C:endoplasmic reticulum | LCB2 PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G76030 | PredictedSynthetic Lethality | FSW = 0.0677
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0565
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G20260 | PredictedSynthetic Lethality | FSW = 0.0255
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0104
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT4G30580 | PredictedSynthetic Rescue | FSW = 0.0471
| Unknown | ATS2 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE/ ACYLTRANSFERASE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0304
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT4G38630 | Predictedtwo hybrid | FSW = 0.0083
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G59410 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT3G58490 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1077
| Unknown | PHOSPHATIDIC ACID PHOSPHATASE FAMILY PROTEIN / PAP2 FAMILY PROTEIN |
AT4G05320 | Predictedinterologs mapping | FSW = 0.0199
| Unknown | UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING |
AT1G08750 | Predictedtwo hybridinteraction prediction | FSW = 0.0133
| Unknown | GPI-ANCHOR TRANSAMIDASE PUTATIVE |
AT3G48780 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1035
| Unknown | SPT1 (SERINE PALMITOYLTRANSFERASE 1) SERINE C-PALMITOYLTRANSFERASE |
AT3G01160 | Predictedtwo hybridinteraction prediction | FSW = 0.0136
| Unknown | UNKNOWN PROTEIN |
AT4G15930 | Predictedinteraction prediction | FSW = 0.0229
| Unknown | MICROTUBULE MOTOR |
AT1G74900 | PredictedGene fusion method | FSW = 0.0421
| Unknown | OTP43 (ORGANELLE TRANSCRIPT PROCESSING DEFECT 43) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454