Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G36490 - ( SFH12 (SEC14-LIKE 12) phosphatidylinositol transporter/ transporter )
80 Proteins interacs with AT4G36490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G12010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1221
| Class C:plasma membrane | UNKNOWN PROTEIN |
AT2G32670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2547
| Class C:plasma membrane | ATVAMP725 |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.0180
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G26340 | PredictedReconstituted Complexinterologs mappingAffinity Capture-Western | FSW = 0.0607
| Class C:plasma membrane | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G18800 | Predictedsynthetic growth defect | FSW = 0.0825
| Class C:plasma membrane | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G63400 | Predictedbiochemical | FSW = 0.0226
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT1G31780 | PredictedAffinity Capture-Western | FSW = 0.0067
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0422
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G10350 | PredictedAffinity Capture-MS | FSW = 0.1496
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT3G26590 | Predictedbiochemical | FSW = 0.0483
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT1G11870 | PredictedSynthetic Lethalitysynthetic growth defectAffinity Capture-Westernsynthetic growth defectsynthetic growth defectSynthetic Lethalityinterologs mapping | FSW = 0.1015
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT1G22170 | PredictedAffinity Capture-MS | FSW = 0.1096
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT1G19660 | PredictedAffinity Capture-MS | FSW = 0.0568
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT3G13580 | PredictedAffinity Capture-MS | FSW = 0.0102
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7D) |
AT5G15450 | Predictedtwo hybrid | FSW = 0.0715
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G06290 | Predictedbiochemical | FSW = 0.0356
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT4G13980 | Predictedbiochemical | FSW = 0.0184
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G06960 | Predictedsynthetic growth defect | FSW = 0.0543
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE |
AT2G36170 | Predictedsynthetic growth defect | FSW = 0.0164
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G56110 | PredictedAffinity Capture-Western | FSW = 0.0174
| Unknown | NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) |
AT2G38880 | PredictedSynthetic Lethalitysynthetic growth defectinterologs mapping | FSW = 0.1052
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT4G25340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1699
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G60980 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic EnhancementSynthetic LethalityReconstituted Complexco-fractionationCo-fractionationsynthetic growth defectinterologs mapping | FSW = 0.4816
| Unknown | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G47630 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.1990
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT3G20970 | PredictedAffinity Capture-MS | FSW = 0.0674
| Unknown | NFU4 STRUCTURAL MOLECULE |
AT2G41380 | PredictedAffinity Capture-MS | FSW = 0.0411
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0692
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT3G60360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2021
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G39200 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.2222
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT2G47990 | Predictedinterologs mappingAffinity Capture-WesternAffinity Capture-Westernsynthetic growth defecttwo hybridinterologs mapping | FSW = 0.0186
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.1494
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G27070 | PredictedAffinity Capture-MS | FSW = 0.1616
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT4G16420 | PredictedSynthetic Rescue | FSW = 0.0586
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT3G13900 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0586
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT4G30800 | Predictedbiochemical | FSW = 0.0109
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT2G05170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0660
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G29540 | Predictedsynthetic growth defect | FSW = 0.1493
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.2006
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT1G11510 | Predictedsynthetic growth defect | FSW = 0.1587
| Unknown | DNA-BINDING STOREKEEPER PROTEIN-RELATED |
AT1G25260 | PredictedSynthetic RescueAffinity Capture-WesternSynthetic RescuePhenotypic Enhancement | FSW = 0.0407
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G26690 | PredictedSynthetic Lethality | FSW = 0.1168
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G29970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1532
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1124
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G44820 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | AMINOACYLASE PUTATIVE / N-ACYL-L-AMINO-ACID AMIDOHYDROLASE PUTATIVE |
AT2G03690 | PredictedAffinity Capture-MS | FSW = 0.0473
| Unknown | COENZYME Q BIOSYNTHESIS COQ4 FAMILY PROTEIN / UBIQUINONE BIOSYNTHESIS COQ4 FAMILY PROTEIN |
AT2G15910 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.1558
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT2G23080 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0239
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G31260 | PredictedAffinity Capture-MS | FSW = 0.0537
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0354
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G06483 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1320
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G12200 | PredictedAffinity Capture-MSinterologs mappingAffinity Capture-MS | FSW = 0.1799
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.0765
| Unknown | UNKNOWN PROTEIN |
AT3G47610 | Predictedsynthetic growth defectsynthetic growth defect | FSW = 0.0643
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G62760 | Predictedinterologs mapping | FSW = 0.0907
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
AT4G04700 | Predictedinterologs mappingSynthetic Lethalitysynthetic growth defect | FSW = 0.2383
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G27130 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.1049
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0338
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.1553
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G30800 | PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31900 | PredictedAffinity Capture-MS | FSW = 0.2162
| Unknown | XIF MOTOR |
AT2G40930 | PredictedAffinity Capture-MS | FSW = 0.0613
| Unknown | UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE |
AT3G06470 | Predictedbiochemical | FSW = 0.0648
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G09640 | PredictedAffinity Capture-MS | FSW = 0.0729
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT3G24010 | PredictedSynthetic Lethality | FSW = 0.1093
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.0634
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G50780 | PredictedAffinity Capture-MS | FSW = 0.1616
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G14240 | Predictedbiochemical | FSW = 0.0192
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G14710 | PredictedPhenotypic Enhancement | FSW = 0.1516
| Unknown | ACIREDUCTONE DIOXYGENASE [IRON(II)-REQUIRING]/ METAL ION BINDING |
AT4G19560 | PredictedAffinity Capture-MS | FSW = 0.1289
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1459
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G13860 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.2312
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14180 | PredictedAffinity Capture-MS | FSW = 0.2087
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G26250 | PredictedAffinity Capture-Western | FSW = 0.0720
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G44740 | Predictedbiochemical | FSW = 0.0197
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0169
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT5G06600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1388
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G38030 | Predictedsynthetic growth defect | FSW = 0.0768
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G48630 | Predictedinterologs mapping | FSW = 0.0325
| Unknown | CYCLIN FAMILY PROTEIN |
AT5G67540 | PredictedAffinity Capture-MS | FSW = 0.0837
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT1G07710 | PredictedGene fusion method | FSW = 0.0129
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454