Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36630 - ( EMB2754 (EMBRYO DEFECTIVE 2754) binding / small GTPase regulator )
42 Proteins interacs with AT4G36630Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31700 | Predictedtwo hybridtwo hybrid | FSW = 0.0761
| Unknown | RPS6 (RIBOSOMAL PROTEIN S6) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G36160 | Predictedtwo hybridtwo hybrid | FSW = 0.0354
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14A) |
AT2G17360 | Predictedtwo hybridtwo hybrid | FSW = 0.0227
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT2G37270 | Predictedinterologs mapping | FSW = 0.0510
| Unknown | ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT4G16720 | Predictedtwo hybridtwo hybrid | FSW = 0.0301
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15A) |
AT1G16030 | Predictedtwo hybridAffinity Capture-Westernsynthetic growth defectPhenotypic Enhancement | FSW = 0.0123
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G42130 | Predictedinterologs mapping | FSW = 0.0717
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT3G57610 | Predictedtwo hybridtwo hybrid | FSW = 0.0296
| Unknown | ADSS (ADENYLOSUCCINATE SYNTHASE) ADENYLOSUCCINATE SYNTHASE |
AT3G18820 | Predictedtwo hybridtwo hybrid | FSW = 0.0313
| Unknown | ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F) GTP BINDING |
AT5G16130 | Predictedtwo hybrid | FSW = 0.0435
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7C) |
AT3G11510 | Predictedtwo hybrid | FSW = 0.0584
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14B) |
AT3G17390 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1024
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT5G08580 | Predictedtwo hybrid | FSW = 0.0200
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT2G47160 | PredictedAffinity Capture-MS | FSW = 0.0554
| Unknown | BOR1 (REQUIRES HIGH BORON 1) ANION EXCHANGER/ BORON TRANSPORTER |
AT3G11730 | PredictedAffinity Capture-MS | FSW = 0.0251
| Unknown | ATFP8 GTP BINDING / GTP-DEPENDENT PROTEIN BINDING / MYOSIN XI TAIL BINDING |
AT5G10360 | Predictedtwo hybrid | FSW = 0.0445
| Unknown | EMB3010 (EMBRYO DEFECTIVE 3010) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G09640 | Predictedtwo hybrid | FSW = 0.0121
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT1G57720 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT5G02490 | Predictedtwo hybrid | FSW = 0.0388
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G17390 | Predictedtwo hybrid | FSW = 0.0546
| Unknown | 60S RIBOSOMAL PROTEIN L15 (RPL15B) |
AT5G58420 | Predictedtwo hybrid | FSW = 0.0697
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4D) |
AT5G23575 | Predictedtwo hybrid | FSW = 0.0437
| Unknown | TRANSMEMBRANE PROTEIN PUTATIVE |
AT1G13060 | Predictedtwo hybrid | FSW = 0.0151
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G02560 | Predictedtwo hybridtwo hybrid | FSW = 0.0245
| Unknown | 40S RIBOSOMAL PROTEIN S7 (RPS7B) |
AT3G52580 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | 40S RIBOSOMAL PROTEIN S14 (RPS14C) |
AT2G20330 | Predictedtwo hybrid | FSW = 0.0444
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G26340 | Predictedtwo hybrid | FSW = 0.0435
| Unknown | 20S PROTEASOME BETA SUBUNIT E PUTATIVE |
AT5G39620 | Predictedtwo hybrid | FSW = 0.0326
| Unknown | ATRABG1 (ARABIDOPSIS RAB GTPASE HOMOLOG G1) GTP BINDING |
AT1G34340 | PredictedPhenotypic EnhancementSynthetic LethalityAffinity Capture-MSCo-purification | FSW = 0.0537
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.0091
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G55020 | PredictedAffinity Capture-MS | FSW = 0.1399
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0289
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT1G06090 | Predictedinterologs mapping | FSW = 0.0694
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
AT3G12490 | Predictedinterologs mapping | FSW = 0.0508
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT3G14390 | PredictedAffinity Capture-MS | FSW = 0.0356
| Unknown | DIAMINOPIMELATE DECARBOXYLASE PUTATIVE / DAP CARBOXYLASE PUTATIVE |
AT3G25585 | PredictedPhenotypic Enhancement | FSW = 0.0142
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
AT4G14670 | PredictedAffinity Capture-MS | FSW = 0.0563
| Unknown | CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G38330 | PredictedPhenotypic EnhancementSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.1568
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G14050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0772
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G08500 | Predictedtwo hybrid | FSW = 0.0421
| Unknown | TRANSMEMBRANE CLPTM1 FAMILY PROTEIN |
AT4G27790 | Predictedtwo hybrid | FSW = 0.0889
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454