Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36640 - ( SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein )

64 Proteins interacs with AT4G36640
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G75170

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0202

Class C:

plasma membrane

cytosol

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G07660Predicted

interologs mapping

Affinity Capture-MS

FSW = 0.1943

Class C:

plasma membrane

HISTONE H4
AT5G62880

Predicted

Synthetic Rescue

FSW = 0.0027

Class C:

plasma membrane

ARAC10 GTP BINDING
AT4G25740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2421

Class C:

plasma membrane

40S RIBOSOMAL PROTEIN S10 (RPS10A)
AT4G18760

Predicted

Phenotypic Enhancement

FSW = 0.1268

Class C:

plasma membrane

ATRLP51 (RECEPTOR LIKE PROTEIN 51) PROTEIN BINDING
AT3G60180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.2389

Class C:

cytosol

URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE
AT4G01100

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2660

Unknown

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT5G19320

Predicted

Affinity Capture-MS

FSW = 0.0816

Unknown

RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.0709

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT1G16240

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2231

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT5G10350

Predicted

Affinity Capture-MS

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

interologs mapping

interologs mapping

Co-crystal Structure

Affinity Capture-Western

Affinity Capture-MS

Co-crystal Structure

interologs mapping

Co-purification

FSW = 0.1192

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT3G22110

Predicted

Synthetic Rescue

FSW = 0.0226

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G55400

Predicted

Phenotypic Enhancement

FSW = 0.0667

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT2G40400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2711

Unknown

UNKNOWN PROTEIN
AT5G14320

Predicted

interologs mapping

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1272

Unknown

30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT2G45300

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1020

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT2G43030

Predicted

Phenotypic Enhancement

FSW = 0.0278

Unknown

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT2G44860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0796

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT4G09800Predicted

Phenotypic Enhancement

FSW = 0.0454

Unknown

RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G76300

Predicted

Colocalization

FSW = 0.0451

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.0816

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT2G28740Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4978

Unknown

HIS4 DNA BINDING
AT2G47620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1004

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G07260

Predicted

Phenotypic Enhancement

FSW = 0.0495

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G10060

Predicted

Phenotypic Enhancement

FSW = 0.0282

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT5G02730

Predicted

Phenotypic Enhancement

FSW = 0.0290

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.0756

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT1G02100

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.1711

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G10980

Predicted

Phenotypic Enhancement

FSW = 0.0258

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 8 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G616701) HAS 482 BLAST HITS TO 481 PROTEINS IN 121 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 255 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 31 (SOURCE NCBI BLINK)
AT1G26140

Predicted

interologs mapping

FSW = 0.0201

Unknown

UNKNOWN PROTEIN
AT1G49520

Predicted

Phenotypic Enhancement

Co-purification

FSW = 0.0580

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G78960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2250

Unknown

ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G01830

Predicted

Phenotypic Enhancement

FSW = 0.0403

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.1169

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G29190

Predicted

Phenotypic Enhancement

FSW = 0.1256

Unknown

APUM2 (ARABIDOPSIS PUMILIO 2) RNA BINDING / BINDING
AT2G33560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-crystal Structure

FSW = 0.0996

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G34750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1829

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G34890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.4793

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT2G37420

Predicted

Phenotypic Enhancement

FSW = 0.0235

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT2G42005

Predicted

Phenotypic Suppression

FSW = 0.0265

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT2G47090

Predicted

Synthetic Rescue

FSW = 0.0100

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.0519

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G09640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Co-purification

FSW = 0.2024

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G14740

Predicted

Phenotypic Enhancement

FSW = 0.0752

Unknown

PHD FINGER FAMILY PROTEIN
AT3G17520

Predicted

Phenotypic Enhancement

FSW = 0.0273

Unknown

LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
AT3G18850

Predicted

Phenotypic Enhancement

FSW = 0.0407

Unknown

LPAT5 ACYLTRANSFERASE
AT3G24495

Predicted

Phenotypic Suppression

FSW = 0.0529

Unknown

MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT4G21480

Predicted

Phenotypic Suppression

FSW = 0.0627

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT4G33950

Predicted

Phenotypic Enhancement

FSW = 0.0412

Unknown

OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT1G55810

Predicted

two hybrid

FSW = 0.0363

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G72680

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2350

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0605

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G32050

Predicted

two hybrid

FSW = 0.0092

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1442

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G25585

Predicted

interologs mapping

FSW = 0.0510

Unknown

AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G28610

Predicted

Affinity Capture-MS

FSW = 0.2708

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G46320Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1277

Unknown

HISTONE H4
AT5G14180

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1092

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT5G20560

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1520

Unknown

BETA-13-GLUCANASE PUTATIVE
AT5G38890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1712

Unknown

EXORIBONUCLEASE-RELATED
AT5G60340Predicted

Affinity Capture-MS

FSW = 0.0120

Unknown

MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN
AT5G66610

Predicted

Affinity Capture-MS

FSW = 0.0483

Unknown

DAR7 (DA1-RELATED PROTEIN 7) ZINC ION BINDING
AT5G66640

Predicted

biochemical

FSW = 0.0097

Unknown

DAR3 (DA1-RELATED PROTEIN 3)
AT5G59440

Predicted

Synthetic Rescue

FSW = 0.0298

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454