Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36730 - ( GBF1 sequence-specific DNA binding / transcription factor )

9 Proteins interacs with AT4G36730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G35530

Experimental

FSW = 0.4931

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN
AT1G32150

Experimental

FSW = 0.2742

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN
AT5G44190

Experimental

two hybrid

in vitro

FSW = 0.0482

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

GLK2 (GOLDEN2-LIKE 2) DNA BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT3G44460

Experimental

FSW = 0.0800

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

DPBF2 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION ACTIVATOR BINDING / TRANSCRIPTION FACTOR
AT4G01120

Experimental

FSW = 0.4148

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

GBF2 (G-BOX BINDING FACTOR 2) DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT2G46270

Experimental

FSW = 0.4828

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

GBF3 (G-BOX BINDING FACTOR 3) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT2G20570

Experimental

two hybrid

Reconstituted Complex

in vitro

FSW = 0.1015

Class A:

nucleus

Class B:

cytosol

GPRI1 (GBFS PRO-RICH REGION-INTERACTING FACTOR 1) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT3G43810

Experimental

protein array

FSW = 0.0061

Class B:

plasma membrane

nucleus

cytosol

Class D:

nucleus (p = 0.78)

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT2G01830

Experimental

FSW = 0.0551

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454