Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT4G36750 - ( quinone reductase family protein )
47 Proteins interacs with AT4G36750Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G27090 | PredictedSynthetic Lethality | FSW = 0.1787
| Class C:vacuoleplasma membrane | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
AT3G08710 | Predictedtwo hybrid | FSW = 0.0608
| Class C:vacuoleplasma membrane | ATH9 (THIOREDOXIN H-TYPE 9) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.1364
| Class C:vacuole | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT1G65240 | PredictedReconstituted Complex | FSW = 0.1421
| Class C:plasma membrane | ASPARTYL PROTEASE FAMILY PROTEIN |
AT2G42590 | Predictedtwo hybrid | FSW = 0.1079
| Class C:plasma membrane | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G71860 | PredictedSynthetic Lethality | FSW = 0.0255
| Class C:plasma membrane | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
AT5G02490 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.0781
| Class C:plasma membrane | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT3G07100 | Predictedtwo hybrid | FSW = 0.0911
| Unknown | PROTEIN TRANSPORT PROTEIN SEC24 PUTATIVE |
AT1G11320 | Predictedtwo hybridAffinity Capture-MS | FSW = 0.1039
| Unknown | UNKNOWN PROTEIN |
AT3G45770 | Predictedtwo hybrid | FSW = 0.1414
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT2G44350 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT5G43840 | Predictedtwo hybrid | FSW = 0.1988
| Unknown | AT-HSFA6A DNA BINDING / TRANSCRIPTION FACTOR |
AT3G13445 | PredictedPhenotypic Enhancement | FSW = 0.0731
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT1G21190 | Predictedtwo hybrid | FSW = 0.0468
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT2G41380 | PredictedSynthetic Lethality | FSW = 0.0282
| Unknown | EMBRYO-ABUNDANT PROTEIN-RELATED |
AT1G10060 | Predictedtwo hybrid | FSW = 0.1764
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1) |
AT4G33730 | PredictedPhenotypic Enhancement | FSW = 0.2199
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54840 | Predictedtwo hybrid | FSW = 0.0458
| Unknown | ARA6 GTP BINDING / GTPASE |
AT1G01020 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.1116
| Unknown | ARV1 |
AT2G43460 | PredictedReconstituted ComplexSynthetic Rescue | FSW = 0.1063
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38A) |
AT1G19730 | PredictedAffinity Capture-MS | FSW = 0.0181
| Unknown | ATTRX4 OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G02630 | PredictedAffinity Capture-MSAffinity Capture-MSco-fractionationCo-fractionationAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1758
| Unknown | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER PUTATIVE (ENT8) |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0557
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G08260 | PredictedReconstituted Complex | FSW = 0.1091
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G49520 | PredictedPhenotypic Enhancement | FSW = 0.1473
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G55810 | Predictedtwo hybrid | FSW = 0.0602
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT1G71530 | Predictedtwo hybrid | FSW = 0.2381
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G76920 | PredictedPhenotypic Enhancement | FSW = 0.1154
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G79730 | Predictedtwo hybrid | FSW = 0.0092
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G01070 | PredictedReconstituted ComplexAffinity Capture-WesternCo-purification | FSW = 0.2090
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G724801) HAS 500 BLAST HITS TO 499 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 271 FUNGI - 99 PLANTS - 97 VIRUSES - 0 OTHER EUKARYOTES - 33 (SOURCE NCBI BLINK) |
AT2G01830 | PredictedPhenotypic Enhancement | FSW = 0.0414
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G23070 | PredictedPhenotypic Enhancement | FSW = 0.0800
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G32765 | PredictedPhenotypic Enhancement | FSW = 0.2001
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0210
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT3G05960 | PredictedPhenotypic Enhancement | FSW = 0.0667
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G17520 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-WesternAffinity Capture-MS | FSW = 0.3784
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT4G24040 | PredictedPhenotypic Enhancement | FSW = 0.2268
| Unknown | TRE1 (TREHALASE 1) ALPHAALPHA-TREHALASE/ TREHALASE |
AT4G33950 | PredictedPhenotypic Enhancement | FSW = 0.1000
| Unknown | OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE |
AT1G13640 | PredictedPhenotypic Suppression | FSW = 0.0291
| Unknown | PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT3G05040 | Predictedtwo hybrid | FSW = 0.2930
| Unknown | HST (HASTY) NUCLEOCYTOPLASMIC TRANSPORTER |
AT3G12490 | Predictedinterologs mapping | FSW = 0.0308
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT5G11570 | PredictedReconstituted Complex | FSW = 0.3000
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G38110 | Predictedtwo hybrid | FSW = 0.1759
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G38290 | Predictedtwo hybrid | FSW = 0.1188
| Unknown | PEPTIDYL-TRNA HYDROLASE FAMILY PROTEIN |
AT5G52210 | Predictedtwo hybrid | FSW = 0.0651
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454