Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G36760 - ( ATAPP1 N-1-naphthylphthalamic acid binding / aminopeptidase )

12 Proteins interacs with AT4G36760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G05350

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0462

Unknown

AMINOPEPTIDASE/ HYDROLASE
AT5G52640

Predicted

Affinity Capture-MS

synthetic growth defect

FSW = 0.0052

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G41580

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

ZINC ION BINDING
AT1G51510

Predicted

two hybrid

FSW = 0.1067

Unknown

Y14 RNA BINDING / PROTEIN BINDING
AT5G48810

Predicted

two hybrid

FSW = 0.0585

Unknown

CB5-D (CYTOCHROME B5 ISOFORM D) HEME BINDING
AT5G04920

Predicted

two hybrid

FSW = 0.0444

Unknown

VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN
AT5G35430

Predicted

two hybrid

two hybrid

FSW = 0.0627

Unknown

BINDING
AT2G33840

Predicted

Affinity Capture-MS

FSW = 0.0970

Unknown

TRNA SYNTHETASE CLASS I (W AND Y) FAMILY PROTEIN
AT3G06483

Predicted

biochemical

FSW = 0.0218

Unknown

PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE
AT5G09830

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0933

Unknown

BOLA-LIKE FAMILY PROTEIN
AT1G28350Predicted

Affinity Capture-MS

FSW = 0.1185

Unknown

ATP BINDING / AMINOACYL-TRNA LIGASE/ NUCLEOTIDE BINDING / TYROSINE-TRNA LIGASE
AT1G62590

Predicted

Gene fusion method

FSW = 0.0697

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454