Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G37010 - ( caltractin putative / centrin putative )
44 Proteins interacs with AT4G37010Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G59580 | Experimentalfilter binding | FSW = 0.0038
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT5G13480 | Experimental | FSW = 0.0057
| Unknown | FY PROTEIN BINDING |
AT3G06290 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0429
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SAC3/GANP/NIN1/MTS3/EIF-3 P25 (INTERPROIPR005062) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SAC3/GANP FAMILY PROTEIN (TAIRAT3G543801) HAS 1341 BLAST HITS TO 841 PROTEINS IN 168 SPECIES ARCHAE - 0 BACTERIA - 24 METAZOA - 448 FUNGI - 228 PLANTS - 85 VIRUSES - 0 OTHER EUKARYOTES - 556 (SOURCE NCBI BLINK) |
AT3G10650 | Experimental | FSW = 0.0196
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 14 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN-RELATED (TAIRAT5G202001) HAS 51621 BLAST HITS TO 25162 PROTEINS IN 1378 SPECIES ARCHAE - 161 BACTERIA - 11485 METAZOA - 15659 FUNGI - 10121 PLANTS - 1099 VIRUSES - 600 OTHER EUKARYOTES - 12496 (SOURCE NCBI BLINK) |
AT5G45010 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0136
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT1G12310 | PredictedPhylogenetic profile method | FSW = 0.6981
| Class C:nucleus | CALMODULIN PUTATIVE |
AT1G24620 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3062
| Class C:nucleus | POLCALCIN PUTATIVE / CALCIUM-BINDING POLLEN ALLERGEN PUTATIVE |
AT4G03290 | PredictedPhylogenetic profile method | FSW = 0.8335
| Class C:nucleus | CALCIUM-BINDING PROTEIN PUTATIVE |
AT1G62820 | PredictedPhylogenetic profile method | FSW = 0.8094
| Class C:nucleus | CALMODULIN PUTATIVE |
AT5G37780 | PredictedPhylogenetic profile method | FSW = 0.8213
| Class C:nucleus | CAM1 (CALMODULIN 1) CALCIUM ION BINDING |
AT2G27030 | PredictedPhylogenetic profile method | FSW = 0.6806
| Unknown | CAM5 (CALMODULIN 5) CALCIUM ION BINDING |
AT5G16630 | Predictedin vivoin vitro | FSW = 0.0142
| Unknown | RAD4 DAMAGED DNA BINDING |
AT1G76650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8462
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT3G50360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.7403
| Unknown | ATCEN2 (CENTRIN2) CALCIUM ION BINDING |
AT5G37770 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | TCH2 (TOUCH 2) CALCIUM ION BINDING |
AT1G18210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2150
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT1G66410 | PredictedPhylogenetic profile method | FSW = 0.2471
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT3G43810 | PredictedPhylogenetic profile method | FSW = 0.2332
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT4G17615 | PredictedGene fusion methodCo-expression | FSW = 0.0113
| Unknown | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT5G49480 | PredictedPhylogenetic profile method | FSW = 0.8750
| Unknown | ATCP1 (CA2+-BINDING PROTEIN 1) CALCIUM ION BINDING |
AT3G03000 | PredictedPhylogenetic profile method | FSW = 0.8213
| Unknown | CALMODULIN PUTATIVE |
AT5G38470 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0136
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT1G76640 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.8312
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT3G03410 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT5G44460 | PredictedPhylogenetic profile method | FSW = 0.3019
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT2G36180 | PredictedPhylogenetic profile method | FSW = 0.8335
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT3G25600 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | CALCIUM ION BINDING |
AT5G21274 | PredictedPhylogenetic profile method | FSW = 0.3019
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT3G03400 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT1G73630 | PredictedPhylogenetic profile method | FSW = 0.8608
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT2G41110 | PredictedPhylogenetic profile method | FSW = 0.8213
| Unknown | CAM2 (CALMODULIN 2) CALCIUM ION BINDING / PROTEIN BINDING |
AT1G66400 | PredictedPhylogenetic profile method | FSW = 0.8213
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT4G12860 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | UNE14 (UNFERTILIZED EMBRYO SAC 14) CALCIUM ION BINDING |
AT4G14640 | PredictedPhylogenetic profile method | FSW = 0.3748
| Unknown | CAM8 (CALMODULIN 8) CALCIUM ION BINDING |
AT5G17470 | PredictedPhylogenetic profile method | FSW = 0.8213
| Unknown | CALMODULIN-RELATED PROTEIN PUTATIVE |
AT3G22930 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | CALMODULIN PUTATIVE |
AT4G20780 | PredictedPhylogenetic profile method | FSW = 0.1412
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT1G05990 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT1G18530 | PredictedPhylogenetic profile method | FSW = 0.8213
| Unknown | CALMODULIN PUTATIVE |
AT3G07490 | PredictedPhylogenetic profile method | FSW = 0.8462
| Unknown | AGD11 (ARF-GAP DOMAIN 11) CALCIUM ION BINDING |
AT3G51920 | PredictedPhylogenetic profile method | FSW = 0.3228
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT1G21550 | PredictedPhylogenetic profile method | FSW = 0.8627
| Unknown | CALCIUM-BINDING PROTEIN PUTATIVE |
AT3G56800 | PredictedPhylogenetic profile method | FSW = 0.8335
| Unknown | CAM3 (CALMODULIN 3) CALCIUM ION BINDING |
AT1G32250 | PredictedPhylogenetic profile method | FSW = 0.8608
| Unknown | CALMODULIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454