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AT4G37260 - ( MYB73 (MYB DOMAIN PROTEIN 73) DNA binding / transcription factor )

4 Proteins interacs with AT4G37260

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT3G48750	Predicted Phenotypic Suppression Phenotypic Suppression	FSW = 0.0164	Class C: nucleus	CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G03415	Predicted Phenotypic Suppression	FSW = 0.1452	Class C: nucleus	DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT1G79000	Predicted Phenotypic Suppression Phenotypic Suppression Phenotypic Enhancement Phenotypic Enhancement	FSW = 0.0239	Unknown	HAC1 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ TRANSCRIPTION COFACTOR
AT5G06150	Predicted Phenotypic Suppression Phenotypic Suppression	FSW = 0.0378	Unknown	CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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