Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G37490 - ( CYCB11 (CYCLIN B11) cyclin-dependent protein kinase regulator )
23 Proteins interacs with AT4G37490Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48750 | Experimental | FSW = 0.0505
| Unknown | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT3G54180 | Experimental | FSW = 0.0771
| Unknown | CDKB11 (CYCLIN-DEPENDENT KINASE B11) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT4G22910 | ExperimentalReconstituted Complex | FSW = 0.1437
| Unknown | FZR2 (FIZZY-RELATED 2) SIGNAL TRANSDUCER |
AT4G11920 | ExperimentalReconstituted Complex | FSW = 0.0774
| Unknown | CCS52A2 SIGNAL TRANSDUCER |
AT5G13840 | ExperimentalReconstituted Complex | FSW = 0.0862
| Unknown | FZR3 (FIZZY-RELATED 3) SIGNAL TRANSDUCER |
AT2G38620 | Experimentalprotein complementation assay | FSW = 0.1405
| Unknown | CDKB12 (CYCLIN-DEPENDENT KINASE B12) CYCLIN BINDING / KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76540 | Experimentalprotein complementation assay | FSW = 0.1470
| Unknown | CDKB21 (CYCLIN-DEPENDENT KINASE B21) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING |
AT1G20930 | Experimentalprotein complementation assay | FSW = 0.1806
| Unknown | CDKB22 (CYCLIN-DEPENDENT KINASE B22) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE |
AT2G01250 | PredictedAffinity Capture-MS | FSW = 0.0136
| Unknown | 60S RIBOSOMAL PROTEIN L7 (RPL7B) |
AT1G72730 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1111
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT3G09820 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.1327
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0133
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0263
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT2G40290 | Predictedtwo hybrid | FSW = 0.0348
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT4G07820 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethalityco-fractionationCo-fractionationinterologs mapping | FSW = 0.2286
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G20410 | PredictedSynthetic LethalitySynthetic LethalitySynthetic Rescue | FSW = 0.1309
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT1G59580 | PredictedSynthetic Lethality | FSW = 0.0833
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G16740 | PredictedSynthetic Lethality | FSW = 0.0036
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G31060 | Predictedsynthetic growth defect | FSW = 0.1818
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT2G47090 | PredictedSynthetic Lethality | FSW = 0.0145
| Unknown | NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G03030 | PredictedSynthetic RescueAffinity Capture-Western | FSW = 0.1345
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT3G11520 | PredictedShared biological functionEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0334
| Unknown | CYCB13 (CYCLIN B13) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G06150 | PredictedShared biological functionEnriched domain pair | FSW = 0.1250
| Unknown | CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454