Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G37680 - ( HHP4 (heptahelical protein 4) receptor )
32 Proteins interacs with AT4G37680Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0424
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT4G33650 | PredictedSynthetic Lethality | FSW = 0.0352
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G16950 | PredictedAffinity Capture-MS | FSW = 0.0201
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT3G19170 | PredictedAffinity Capture-MS | FSW = 0.0183
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
AT3G23940 | PredictedAffinity Capture-MS | FSW = 0.0454
| Unknown | DEHYDRATASE FAMILY |
AT3G18790 | PredictedAffinity Capture-MS | FSW = 0.1021
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S ISY1-LIKE SPLICING (INTERPROIPR009360) HAS 1075 BLAST HITS TO 879 PROTEINS IN 176 SPECIES ARCHAE - 8 BACTERIA - 11 METAZOA - 379 FUNGI - 177 PLANTS - 27 VIRUSES - 9 OTHER EUKARYOTES - 464 (SOURCE NCBI BLINK) |
AT1G07180 | PredictedAffinity Capture-MS | FSW = 0.0543
| Unknown | NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) NADH DEHYDROGENASE |
AT5G59950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1286
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0696
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G07980 | Predictedtwo hybridtwo hybrid | FSW = 0.0653
| Unknown | NF-YC10 (NUCLEAR FACTOR Y SUBUNIT C10) TRANSCRIPTION FACTOR |
AT2G43810 | PredictedAffinity Capture-MS | FSW = 0.0070
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G05520 | Predictedtwo hybridtwo hybrid | FSW = 0.0169
| Unknown | F-ACTIN CAPPING PROTEIN ALPHA SUBUNIT FAMILY PROTEIN |
AT2G47990 | PredictedAffinity Capture-MS | FSW = 0.0199
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT1G74320 | PredictedSynthetic Lethality | FSW = 0.0940
| Unknown | CHOLINE KINASE PUTATIVE |
AT1G47830 | PredictedAffinity Capture-MS | FSW = 0.0405
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT2G01830 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0548
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G47970 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0384
| Unknown | NPL4 FAMILY PROTEIN |
AT3G10780 | PredictedAffinity Capture-MS | FSW = 0.0588
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT3G11230 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G18660 | PredictedAffinity Capture-MS | FSW = 0.0711
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G45240 | PredictedAffinity Capture-MS | FSW = 0.0467
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G58830 | PredictedAffinity Capture-MS | FSW = 0.0176
| Unknown | HALOACID DEHALOGENASE (HAD) SUPERFAMILY PROTEIN |
AT4G12790 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | ATP-BINDING FAMILY PROTEIN |
AT4G21490 | PredictedAffinity Capture-MS | FSW = 0.0492
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G25150 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT5G56740 | PredictedAffinity Capture-MS | FSW = 0.0360
| Unknown | HAG2 (HISTONE ACETYLTRANSFERASE OF THE GNAT FAMILY 2) H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE |
AT5G39400 | PredictedAffinity Capture-MS | FSW = 0.0752
| Unknown | PTEN1 PHOSPHATASE |
AT1G07400 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | 178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI) |
AT1G59860 | Predictedtwo hybrid | FSW = 0.0352
| Unknown | 176 KDA CLASS I HEAT SHOCK PROTEIN (HSP176A-CI) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454