Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G37870 - ( PCK1 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 1) ATP binding / phosphoenolpyruvate carboxykinase (ATP)/ phosphoenolpyruvate carboxykinase/ purine nucleotide binding )
22 Proteins interacs with AT4G37870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G43810 | Experimentalprotein array | FSW = 0.0161
| Class B:unclearplasma membranenucleusextracellularClass D:cytosol (p = 0.67) | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT1G66410 | Experimentalprotein array | FSW = 0.0250
| Class B:unclearplasma membranenucleusextracellularClass D:cytosol (p = 0.67) | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
AT4G23050 | Experimentalprotein array | FSW = 0.1129
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G51920 | Experimentalprotein array | FSW = 0.0340
| Unknown | CAM9 (CALMODULIN 9) CALCIUM ION BINDING |
AT2G41090 | Experimentalprotein array | FSW = 0.0065
| Unknown | CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22) |
AT5G21274 | Experimentalprotein array | FSW = 0.0227
| Unknown | CAM6 (CALMODULIN 6) CALCIUM ION BINDING |
AT5G26030 | PredictedAffinity Capture-MS | FSW = 0.0376
| Class C:unclear | FC1 (FERROCHELATASE 1) FERROCHELATASE |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.0156
| Class C:nucleus | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT1G27450 | PredictedAffinity Capture-MS | FSW = 0.0168
| Class C:extracellular | APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE |
AT3G56760 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | CALCIUM-DEPENDENT PROTEIN KINASE PUTATIVE / CDPK PUTATIVE |
AT2G37790 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G10040 | PredictedAffinity Capture-MSCo-crystal Structure | FSW = 0.0831
| Unknown | CYTC-2 (CYTOCHROME C-2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING |
AT5G10330 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE |
AT1G34460 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0243
| Unknown | CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT3G02320 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternColocalization | FSW = 0.0641
| Unknown | RNA BINDING / TRNA (GUANINE-N2-)-METHYLTRANSFERASE |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT2G31020 | PredictedAffinity Capture-MS | FSW = 0.0037
| Unknown | ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING |
AT5G13400 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G09000 | PredictedSynthetic Rescue | FSW = 0.0246
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
AT5G65690 | PredictedPhylogenetic profile method | FSW = 0.0237
| Unknown | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454