Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G37980 - ( ELI3-1 (ELICITOR-ACTIVATED GENE 3-1) binding / catalytic/ oxidoreductase/ zinc ion binding )

10 Proteins interacs with AT4G37980
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G34230

Predicted

Shared biological function

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.5786

Unknown

ATCAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) CINNAMYL-ALCOHOL DEHYDROGENASE
AT3G13720

Predicted

Reconstituted Complex

Synthetic Lethality

FSW = 0.0443

Unknown

PRA8
AT2G16740

Predicted

Synthetic Lethality

FSW = 0.0131

Unknown

UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE
AT1G72680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3115

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT4G37970

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6605

Unknown

CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT4G37990

Predicted

Shared biological function

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.6325

Unknown

ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) ARYL-ALCOHOL DEHYDROGENASE/ MANNITOL DEHYDROGENASE
AT3G19450

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.6480

Unknown

ATCAD4 CINNAMYL-ALCOHOL DEHYDROGENASE
AT4G39330

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1283

Unknown

CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT2G21890

Predicted

Phylogenetic profile method

FSW = 0.4263

Unknown

CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT2G21730

Predicted

Phylogenetic profile method

FSW = 0.6000

Unknown

CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454