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AT4G38130 - ( HD1 (HISTONE DEACETYLASE 1) basal transcription repressor/ histone deacetylase/ protein binding )

89 Proteins interacs with AT4G38130

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT1G48050	Experimental pull down	FSW = 0.0284	Class A: nucleus Class B: cytosol Class D: nucleus (p = 0.78)	KU80 DOUBLE-STRANDED DNA BINDING / PROTEIN BINDING
AT2G45640	Experimental two hybrid in vitro pull down Reconstituted Complex	FSW = 0.0351	Class A: nucleus Class D: nucleus (p = 0.78)	SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR
AT5G22570	Experimental	FSW = 0.0645	Class A: nucleus Class D: nucleus (p = 0.78)	WRKY38 TRANSCRIPTION FACTOR
AT5G01900	Experimental interaction detection method	FSW = 0.0484	Class A: nucleus Class D: nucleus (p = 0.78)	WRKY62 TRANSCRIPTION FACTOR
AT4G32551	Experimental Reconstituted Complex in vitro	FSW = 0.0111	Class A: nucleus Class D: nucleus (p = 0.78)	LUG (LEUNIG) PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION REPRESSOR
AT1G50640	Experimental	FSW = 0.0224	Class D: nucleus (p = 0.78)	ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT2G39940	Experimental Affinity Capture-Western	FSW = 0.0138	Unknown	COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G24190	Experimental two hybrid	FSW = 0.0376	Unknown	SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR
AT1G02580	Predicted Affinity Capture-MS in vivo	FSW = 0.0567	Class C: nucleus	MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT2G44680	Predicted Affinity Capture-MS interaction prediction	FSW = 0.0493	Class C: nucleus	CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT3G54610	Predicted Synthetic Rescue Phenotypic Enhancement Synthetic Rescue Co-expression	FSW = 0.0984	Class C: nucleus	GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT1G21690	Predicted Affinity Capture-MS in vivo Co-expression	FSW = 0.0310	Class C: nucleus	EMB1968 (EMBRYO DEFECTIVE 1968) ATP BINDING / ATPASE/ DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT4G10670	Predicted synthetic growth defect	FSW = 0.0726	Class C: nucleus	GTC2
AT4G29390	Predicted two hybrid Co-expression	FSW = 0.0049	Class C: nucleus	40S RIBOSOMAL PROTEIN S30 (RPS30B)
AT2G25170	Predicted Phenotypic Enhancement Affinity Capture-Western Affinity Capture-Western Phenotypic Enhancement Affinity Capture-MS Affinity Capture-Western in vitro in vivo Co-expression	FSW = 0.0228	Class C: nucleus	PKL (PICKLE) ATPASE/ DNA BINDING / DNA HELICASE
AT1G02740	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0656	Class C: nucleus	CHROMATIN BINDING
AT2G29570	Predicted Affinity Capture-MS Reconstituted Complex Affinity Capture-Western in vitro in vivo Co-expression	FSW = 0.0488	Class C: nucleus	PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR
AT2G37470	Predicted synthetic growth defect	FSW = 0.0129	Class C: nucleus	HISTONE H2B PUTATIVE
AT5G60410	Predicted Affinity Capture-MS in vivo	FSW = 0.0421	Class C: nucleus	SIZ1 DNA BINDING / SUMO LIGASE
AT1G65470	Predicted Synthetic Rescue Shared biological function Co-expression	FSW = 0.0588	Class C: nucleus	FAS1 (FASCIATA 1) HISTONE BINDING
AT3G20740	Predicted co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Co-purification	FSW = 0.0612	Class C: nucleus	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM) NUCLEOTIDE BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT3G17590	Predicted Co-purification	FSW = 0.0504	Class C: nucleus	BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT3G06400	Predicted synthetic growth defect synthetic growth defect	FSW = 0.0145	Class C: nucleus	CHR11 (CHROMATIN-REMODELING PROTEIN 11) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT3G27280	Predicted in vivo Affinity Capture-MS Affinity Capture-Western Reconstituted Complex Co-expression	FSW = 0.0324	Unknown	ATPHB4 (PROHIBITIN 4)
AT2G33210	Predicted Affinity Capture-Western	FSW = 0.0021	Unknown	HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT1G27400	Predicted Affinity Capture-MS Co-expression	FSW = 0.0138	Unknown	60S RIBOSOMAL PROTEIN L17 (RPL17A)
AT5G63110	Predicted Shared biological function Phylogenetic profile method Co-expression	FSW = 0.2079	Unknown	HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE
AT1G80070	Predicted two hybrid Shared biological function Co-expression	FSW = 0.0019	Unknown	SUS2 (ABNORMAL SUSPENSOR 2)
AT5G58230	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Reconstituted Complex in vivo in vitro Affinity Capture-Western Affinity Capture-MS Co-purification	FSW = 0.0774	Unknown	MSI1 (MULTICOPY SUPRESSOR OF IRA1) PROTEIN BINDING
AT2G16600	Predicted Affinity Capture-Western	FSW = 0.0102	Unknown	ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G62810	Predicted in vivo Affinity Capture-MS	FSW = 0.0118	Unknown	PEX14 PROTEIN BINDING / PROTEIN TRANSPORTER
AT2G18040	Predicted Affinity Capture-Western interologs mapping Synthetic Rescue	FSW = 0.0415	Unknown	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G79930	Predicted Affinity Capture-Western	FSW = 0.0126	Unknown	HSP91 ATP BINDING
AT3G47690	Predicted Synthetic Lethality	FSW = 0.0769	Unknown	ATEB1A MICROTUBULE BINDING
AT3G23890	Predicted Reconstituted Complex Affinity Capture-Western Reconstituted Complex two hybrid	FSW = 0.0458	Unknown	TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT3G28730	Predicted Synthetic Rescue Co-expression	FSW = 0.0849	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G16845	Predicted Affinity Capture-Western co-fractionation Co-fractionation	FSW = 0.0681	Unknown	VRN2 (REDUCED VERNALIZATION RESPONSE 2) TRANSCRIPTION FACTOR
AT4G02020	Predicted Affinity Capture-Western Affinity Capture-Western co-fractionation Co-fractionation Affinity Capture-Western Co-fractionation Reconstituted Complex Affinity Capture-MS	FSW = 0.0577	Unknown	SWN (SWINGER) TRANSCRIPTION FACTOR
AT5G04940	Predicted Affinity Capture-MS	FSW = 0.0231	Unknown	SUVH1 (SU(VAR)3-9 HOMOLOG 1) HISTONE METHYLTRANSFERASE
AT5G40820	Predicted Synthetic Rescue	FSW = 0.0513	Unknown	ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT1G71790	Predicted two hybrid two hybrid	FSW = 0.0060	Unknown	F-ACTIN CAPPING PROTEIN BETA SUBUNIT FAMILY PROTEIN
AT1G70060	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Co-purification co-fractionation Co-fractionation	FSW = 0.1309	Unknown	SNL4 (SIN3-LIKE 4)
AT3G05480	Predicted Affinity Capture-MS Affinity Capture-Western in vitro in vivo	FSW = 0.0458	Unknown	RAD9
AT4G32820	Predicted Affinity Capture-Western	FSW = 0.0387	Unknown	BINDING
AT1G49900	Predicted in vivo	FSW = 0.0248	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT1G49910	Predicted Affinity Capture-Western Co-purification	FSW = 0.0352	Unknown	WD-40 REPEAT FAMILY PROTEIN / MITOTIC CHECKPOINT PROTEIN PUTATIVE
AT2G33560	Predicted Affinity Capture-Western Co-purification	FSW = 0.0144	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT4G08990	Predicted Reconstituted Complex co-fractionation Co-fractionation Affinity Capture-Western	FSW = 0.0484	Unknown	DNA (CYTOSINE-5-)-METHYLTRANSFERASE PUTATIVE
AT4G33270	Predicted Affinity Capture-Western Co-purification	FSW = 0.0220	Unknown	CDC201 SIGNAL TRANSDUCER
AT5G22010	Predicted Affinity Capture-Western Reconstituted Complex in vitro in vivo	FSW = 0.0349	Unknown	ATRFC1 (REPLICATION FACTOR C 1) ATP BINDING / DNA BINDING / DNA CLAMP LOADER/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G49880	Predicted Affinity Capture-Western Co-purification	FSW = 0.0246	Unknown	MITOTIC CHECKPOINT FAMILY PROTEIN
AT5G58760	Predicted in vitro Affinity Capture-MS	FSW = 0.0110	Unknown	DDB2 (DAMAGED DNA-BINDING 2) NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT3G01320	Predicted Affinity Capture-Western	FSW = 0.0076	Unknown	SNL1 (SIN3-LIKE 1)
AT3G18520	Predicted Synthetic Lethality	FSW = 0.0259	Unknown	HDA15 HISTONE DEACETYLASE
AT4G37280	Predicted Affinity Capture-Western interaction prediction	FSW = 0.0284	Unknown	MRG FAMILY PROTEIN
AT4G40030	Predicted biochemical	FSW = 0.0215	Unknown	HISTONE H32
AT3G12280	Predicted Affinity Capture-MS in vitro in vivo Co-expression	FSW = 0.0111	Unknown	RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G52530	Predicted Affinity Capture-MS in vitro in vivo	FSW = 0.0681	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 7 PLANT STRUCTURES EXPRESSED DURING F MATURE EMBRYO STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S HUS1-LIKE PROTEIN (INTERPROIPR007150) HAS 88 BLAST HITS TO 87 PROTEINS IN 31 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 51 FUNGI - 6 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 10 (SOURCE NCBI BLINK)
AT3G24200	Predicted Affinity Capture-MS	FSW = 0.0619	Unknown	FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN
AT1G10450	Predicted Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.2552	Unknown	SNL6 (SIN3-LIKE 6)
AT2G23080	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0417	Unknown	CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT5G55300	Predicted Affinity Capture-MS Affinity Capture-MS interaction prediction	FSW = 0.0556	Unknown	TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT3G25100	Predicted Affinity Capture-MS interaction prediction Co-expression	FSW = 0.0449	Unknown	CDC45 (CELL DIVISION CYCLE 45)
AT2G43790	Predicted Affinity Capture-Western	FSW = 0.0084	Unknown	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT1G15780	Predicted Affinity Capture-Western	FSW = 0.0526	Unknown	UNKNOWN PROTEIN
AT2G15790	Predicted interologs mapping interaction prediction	FSW = 0.0128	Unknown	SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G35940	Predicted in vitro	FSW = 0.0092	Unknown	BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION/ TRANSCRIPTION FACTOR
AT3G60580	Predicted in vivo	FSW = 0.0348	Unknown	ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT2G02070	Predicted in vivo	FSW = 0.0348	Unknown	ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5) NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT5G13780	Predicted synthetic growth defect	FSW = 0.0503	Unknown	GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT4G38630	Predicted synthetic growth defect Co-expression	FSW = 0.0154	Unknown	RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT3G58560	Predicted synthetic growth defect	FSW = 0.0631	Unknown	ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT2G23420	Predicted synthetic growth defect	FSW = 0.0402	Unknown	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G80410	Predicted synthetic growth defect	FSW = 0.0377	Unknown	EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G66740	Predicted synthetic growth defect	FSW = 0.1016	Unknown	SGA2
AT1G55255	Predicted synthetic growth defect	FSW = 0.0661	Unknown	SGA2
AT1G14400	Predicted synthetic growth defect Synthetic Rescue	FSW = 0.0764	Unknown	UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G15920	Predicted Synthetic Lethality	FSW = 0.0554	Unknown	CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT1G54140	Predicted Synthetic Lethality Co-expression	FSW = 0.0571	Unknown	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G52740	Predicted Synthetic Lethality	FSW = 0.0882	Unknown	HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT5G50320	Predicted Synthetic Lethality Co-expression	FSW = 0.0985	Unknown	ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT1G49540	Predicted Synthetic Lethality	FSW = 0.0664	Unknown	NUCLEOTIDE BINDING
AT4G10310	Predicted Synthetic Rescue Synthetic Rescue	FSW = 0.0600	Unknown	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER
AT1G09200	Predicted Synthetic Rescue Co-expression	FSW = 0.1109	Unknown	HISTONE H3
AT4G37210	Predicted two hybrid Co-expression	FSW = 0.0110	Unknown	TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN
AT3G56640	Predicted two hybrid	FSW = 0.0048	Unknown	EXOCYST COMPLEX SUBUNIT SEC15-LIKE FAMILY PROTEIN
AT5G67380	Predicted interaction prediction	FSW = 0.0203	Unknown	CKA1 (CASEIN KINASE ALPHA 1) KINASE
AT3G44680	Predicted Phylogenetic profile method Co-expression	FSW = 0.0382	Unknown	HDA9 (HISTONE DEACETYLASE 9) HISTONE DEACETYLASE
AT5G35600	Predicted Phylogenetic profile method Co-expression	FSW = 0.0851	Unknown	HDA7 (HISTONE DEACETYLASE7) HISTONE DEACETYLASE

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Proteins

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT4G38130 - ( HD1 (HISTONE DEACETYLASE 1) basal transcription repressor/ histone deacetylase/ protein binding )

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