Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38250 - ( amino acid transporter family protein )
60 Proteins interacs with AT4G38250Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16660 | PredictedPhenotypic SuppressionAffinity Capture-MS | FSW = 0.3243
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT3G15710 | Predictedtwo hybrid | FSW = 0.0759
| Unknown | SIGNAL PEPTIDASE PUTATIVE |
AT5G10350 | PredictedbiochemicalbiochemicalSynthetic Rescuebiochemical | FSW = 0.0725
| Unknown | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
AT2G45960 | PredictedSynthetic Rescue | FSW = 0.0480
| Unknown | PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B) WATER CHANNEL |
AT5G09660 | PredictedPhenotypic Enhancement | FSW = 0.0823
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT1G55920 | PredictedPhenotypic Enhancement | FSW = 0.0437
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
AT3G23600 | PredictedAffinity Capture-Western | FSW = 0.0188
| Unknown | DIENELACTONE HYDROLASE FAMILY PROTEIN |
AT3G02600 | PredictedAffinity Capture-MS | FSW = 0.1023
| Unknown | LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) PHOSPHATIDATE PHOSPHATASE |
AT2G36590 | PredictedGene fusion method | FSW = 0.0150
| Unknown | PROT3 (PROLINE TRANSPORTER 3) L-PROLINE TRANSMEMBRANE TRANSPORTER/ AMINO ACID TRANSMEMBRANE TRANSPORTER |
AT4G15000 | PredictedPhenotypic Suppression | FSW = 0.0097
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT5G19310 | PredictedPhenotypic Enhancement | FSW = 0.0367
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G13445 | PredictedPhenotypic Suppression | FSW = 0.0558
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G52250 | PredictedPhenotypic Enhancement | FSW = 0.1388
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT4G09800 | PredictedPhenotypic Suppression | FSW = 0.0747
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G28460 | Predictedtwo hybridReconstituted Complextwo hybridtwo hybridAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.4209
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25340 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.1756
| Unknown | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT5G12840 | PredictedPhenotypic Enhancement | FSW = 0.0110
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT1G52300 | PredictedPhenotypic Suppression | FSW = 0.0310
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT4G39200 | PredictedPhenotypic Enhancement | FSW = 0.1884
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT4G16420 | PredictedSynthetic Lethality | FSW = 0.0740
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G17190 | PredictedPhenotypic Enhancement | FSW = 0.0961
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G13580 | PredictedPhenotypic SuppressionAffinity Capture-Western | FSW = 0.1979
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G13950 | Predictedsynthetic growth defect | FSW = 0.0589
| Unknown | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR |
AT1G26690 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0942
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G52500 | PredictedPhenotypic Suppression | FSW = 0.1253
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT1G80710 | PredictedPhenotypic Enhancement | FSW = 0.0666
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G03130 | PredictedPhenotypic Suppression | FSW = 0.1251
| Unknown | RIBOSOMAL PROTEIN L12 FAMILY PROTEIN |
AT2G30800 | PredictedPhenotypic Suppression | FSW = 0.0537
| Unknown | HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G31260 | PredictedPhenotypic Suppression | FSW = 0.0914
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G36060 | Predictedbiochemical | FSW = 0.0234
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
AT2G47570 | PredictedPhenotypic Suppression | FSW = 0.0205
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G06470 | PredictedAffinity Capture-Westerntwo hybridSynthetic Rescue | FSW = 0.0717
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G16900 | Predictedbiochemical | FSW = 0.0282
| Unknown | UNKNOWN PROTEIN |
AT3G18660 | PredictedPhenotypic Suppression | FSW = 0.0723
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G21460 | Predictedsynthetic growth defect | FSW = 0.1558
| Unknown | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G24010 | PredictedAffinity Capture-Western | FSW = 0.1044
| Unknown | ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G25900 | PredictedPhenotypic Suppression | FSW = 0.0928
| Unknown | HMT-1 HOMOCYSTEINE S-METHYLTRANSFERASE |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.1025
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G19560 | PredictedPhenotypic Enhancement | FSW = 0.1822
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G29580 | PredictedPhenotypic Suppression | FSW = 0.0546
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0179
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.1530
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT2G38490 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1043
| Unknown | CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G12670 | PredictedSynthetic Rescue | FSW = 0.0377
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G27060 | PredictedPhenotypic Enhancement | FSW = 0.0085
| Unknown | TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING |
AT4G20020 | PredictedPhenotypic Suppression | FSW = 0.0256
| Unknown | UNKNOWN PROTEIN |
AT4G20870 | PredictedAffinity Capture-MS | FSW = 0.0961
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G25950 | PredictedPhenotypic Enhancement | FSW = 0.0732
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G27130 | PredictedPhenotypic Suppression | FSW = 0.1525
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G14180 | Predictedsynthetic growth defect | FSW = 0.1025
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT5G42720 | PredictedPhenotypic Enhancement | FSW = 0.1273
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT5G13480 | Predictedbiochemical | FSW = 0.0092
| Unknown | FY PROTEIN BINDING |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.1430
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.1580
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G42600 | PredictedAffinity Capture-MS | FSW = 0.0716
| Unknown | MRN1 (MARNERAL SYNTHASE) CATALYTIC/ MARNERAL SYNTHASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.1215
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT5G49970 | PredictedPhenotypic Enhancement | FSW = 0.1781
| Unknown | ATPPOX (A THALIANA PYRIDOXIN (PYRODOXAMINE) 5-PHOSPHATE OXIDASE) PYRIDOXAMINE-PHOSPHATE OXIDASE |
AT5G53300 | PredictedPhenotypic Enhancement | FSW = 0.0131
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT5G65990 | PredictedPhylogenetic profile method | FSW = 0.0433
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G09550 | PredictedGene fusion method | FSW = 0.0134
| Unknown | PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454