Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38330 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN integral to membrane EXPRESSED IN male gametophyte pollen tube EXPRESSED DURING L mature pollen stage M germinated pollen stage CONTAINS InterPro DOMAIN/s Hly-III related (InterProIPR004254) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT4G382901) Has 8 Blast hits to 8 proteins in 1 species Archae - 0 Bacteria - 0 Metazoa - 0 Fungi - 0 Plants - 8 Viruses - 0 Other Eukaryotes - 0 (source NCBI BLink) )
17 Proteins interacs with AT4G38330| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G42130
   | Predictedinterologs mapping | FSW = 0.1531
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
| AT3G17390
| Predictedtwo hybridinterologs mappingAffinity Capture-Western | FSW = 0.0945
| Unknown | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
| AT4G38600
| PredictedAffinity Capture-MS | FSW = 0.0308
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
| AT1G69850
| PredictedPhenotypic Enhancement | FSW = 0.0258
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
| AT2G43810
| PredictedPhenotypic Enhancement | FSW = 0.0057
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
| AT5G40650
| PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | SDH2-2 ELECTRON CARRIER/ SUCCINATE DEHYDROGENASE |
| AT1G50110
| PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 6 (BCAT6) |
| AT5G63960
| Predictedinterologs mapping | FSW = 0.0530
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G47880
| Predictedinterologs mapping | FSW = 0.0209
| Unknown | ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1) TRANSLATION RELEASE FACTOR |
| AT1G34340
| Predictedsynthetic growth defectinterologs mapping | FSW = 0.1600
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
| AT2G30650
| Predictedinterologs mapping | FSW = 0.0808
| Unknown | CATALYTIC |
| AT4G22330
| PredictedPhenotypic Suppression | FSW = 0.0421
| Unknown | ATCES1 CATALYTIC/ HYDROLASE ACTING ON CARBON-NITROGEN (BUT NOT PEPTIDE) BONDS IN LINEAR AMIDES |
| AT4G36630
| PredictedPhenotypic EnhancementSynthetic LethalityPhenotypic EnhancementSynthetic Lethality | FSW = 0.1568
| Unknown | EMB2754 (EMBRYO DEFECTIVE 2754) BINDING / SMALL GTPASE REGULATOR |
| AT1G06090
| Predictedinterologs mapping | FSW = 0.1003
| Unknown | FATTY ACID DESATURASE FAMILY PROTEIN |
| AT2G36060
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | UBIQUITIN-CONJUGATING ENZYME FAMILY PROTEIN |
| AT3G12490
| Predictedinterologs mapping | FSW = 0.1060
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
| AT3G47120
| Predictedinterologs mapping | FSW = 0.0510
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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