Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38495 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown CONTAINS InterPro DOMAIN/s YL1 nuclear C-terminal (InterProIPR013272) Has 189 Blast hits to 189 proteins in 98 species Archae - 0 Bacteria - 0 Metazoa - 80 Fungi - 83 Plants - 17 Viruses - 0 Other Eukaryotes - 9 (source NCBI BLink) )

15 Proteins interacs with AT4G38495
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67630

Predicted

Affinity Capture-MS

FSW = 0.1240

Unknown

DNA HELICASE PUTATIVE
AT5G22330

Predicted

Affinity Capture-MS

FSW = 0.1200

Unknown

RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1) PROTEIN BINDING
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.1190

Unknown

DNA HELICASE-RELATED
AT3G44530

Predicted

Synthetic Lethality

FSW = 0.0432

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G57300

Predicted

Affinity Capture-MS

FSW = 0.1469

Unknown

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G44950

Predicted

Synthetic Lethality

FSW = 0.0656

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT2G36200

Predicted

synthetic growth defect

FSW = 0.0271

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT5G28740

Predicted

two hybrid

two hybrid

FSW = 0.0254

Unknown

TRANSCRIPTION-COUPLED DNA REPAIR PROTEIN-RELATED
AT3G12380

Predicted

Affinity Capture-MS

FSW = 0.3874

Unknown

ATARP5 (ACTIN-RELATED PROTEIN 5) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.0417

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT5G53770

Predicted

Synthetic Lethality

FSW = 0.0344

Unknown

NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN
AT5G43500

Predicted

Affinity Capture-MS

FSW = 0.1972

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT2G23420

Predicted

synthetic growth defect

FSW = 0.0316

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G55255Predicted

Synthetic Lethality

FSW = 0.0454

Unknown

NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT1G14400

Predicted

Synthetic Lethality

FSW = 0.0584

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454