Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G38740 - ( ROC1 (ROTAMASE CYP 1) peptidyl-prolyl cis-trans isomerase )
51 Proteins interacs with AT4G38740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G34870 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3165
| Class C:plasma membraneperoxisomecytosol | ROC5 (ROTAMASE CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G16600 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.6222
| Class C:plasma membraneperoxisomecytosol | ROC3 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0124
| Class C:plasma membranecytosol | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G38730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2688
| Class C:plasma membrane | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE |
AT3G43810 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0052
| Class C:plasma membrane | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
AT2G18040 | Predictedinterologs mappingSynthetic Lethality | FSW = 0.0292
| Class C:plasma membrane | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G21130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3600
| Class C:plasma membrane | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE / CYCLOPHILIN (CYP2) / ROTAMASE |
AT5G58710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3072
| Class C:plasma membrane | ROC7 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G29210 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | GGT4 (GAMMA-GLUTAMYL TRANSPEPTIDASE 4) GAMMA-GLUTAMYLTRANSFERASE/ GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
AT5G67630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0037
| Unknown | DNA HELICASE PUTATIVE |
AT1G12520 | PredictedAffinity Capture-MS | FSW = 0.0214
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT1G17745 | Predictedinteraction prediction | FSW = 0.0212
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT5G63110 | PredictedAffinity Capture-Western | FSW = 0.0371
| Unknown | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
AT2G18510 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0319
| Unknown | EMB2444 (EMBRYO DEFECTIVE 2444) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G36010 | Predictedtwo hybridtwo hybrid | FSW = 0.0309
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G64630 | PredictedPhenotypic Enhancement | FSW = 0.0262
| Unknown | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G22220 | Predictedtwo hybrid | FSW = 0.0201
| Unknown | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0103
| Unknown | SGP1 GTP BINDING |
AT4G30330 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT5G19310 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0251
| Unknown | HOMEOTIC GENE REGULATOR PUTATIVE |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.0130
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT5G48970 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT2G29960 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2805
| Unknown | CYP5 (CYCLOPHILIN 5) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G03730 | Predictedin vivo | FSW = 0.0197
| Unknown | CTR1 (CONSTITUTIVE TRIPLE RESPONSE 1) KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT4G26840 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0129
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT3G05210 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0301
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT2G16950 | Predictedtwo hybrid | FSW = 0.0068
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT4G28820 | Predictedtwo hybridtwo hybrid | FSW = 0.0198
| Unknown | ZINC FINGER (HIT TYPE) FAMILY PROTEIN |
AT5G56750 | Predictedtwo hybridtwo hybrid | FSW = 0.0189
| Unknown | NDR FAMILY PROTEIN |
AT3G12280 | PredictedAffinity Capture-MS | FSW = 0.0180
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G04710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Rescue | FSW = 0.0318
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0131
| Unknown | HISTONE H4 |
AT1G29990 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0389
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0074
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G13680 | PredictedSynthetic Rescue | FSW = 0.0123
| Unknown | CALS5 (CALLOSE SYNTHASE 5) 13-BETA-GLUCAN SYNTHASE |
AT2G36930 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0081
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G40430 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TUMOR SUPPRESSOR PROTEIN GLTSCR2 (INTERPROIPR011211) P60-LIKE (INTERPROIPR011687) HAS 601 BLAST HITS TO 544 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 22 METAZOA - 201 FUNGI - 103 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 243 (SOURCE NCBI BLINK) |
AT2G44150 | Predictedsynthetic growth defectSynthetic Lethality | FSW = 0.0529
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT3G22480 | PredictedSynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.0654
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G47120 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0201
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT3G59630 | PredictedAffinity Capture-MS | FSW = 0.1032
| Unknown | DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN |
AT4G15475 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | F-BOX FAMILY PROTEIN (FBL4) |
AT4G33240 | PredictedPhenotypic Suppression | FSW = 0.0545
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G09230 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1041
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT5G49510 | PredictedPhenotypic Enhancement | FSW = 0.0445
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G67320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternSynthetic Rescueinteraction prediction | FSW = 0.1098
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G37340 | PredictedSynthetic Lethality | FSW = 0.0327
| Unknown | ZINC FINGER (ZPR1-TYPE) FAMILY PROTEIN |
AT5G01720 | Predictedinteraction prediction | FSW = 0.0462
| Unknown | F-BOX FAMILY PROTEIN (FBL3) |
AT3G56070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2744
| Unknown | ROC2 (ROTAMASE CYCLOPHILIN 2) CYCLOSPORIN A BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G36130 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2774
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE / CYCLOPHILIN PUTATIVE / ROTAMASE PUTATIVE |
AT1G01940 | PredictedPhylogenetic profile method | FSW = 0.2688
| Unknown | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYCLOPHILIN-TYPE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454