Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39400 - ( BRI1 (BRASSINOSTEROID INSENSITIVE 1) kinase/ protein binding / protein heterodimerization/ protein homodimerization/ protein kinase/ protein serine/threonine kinase )
12 Proteins interacs with AT4G39400| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G78300
   | Experimental | FSW = 0.0505
| Class A:vacuoleplasma membraneClass B:peroxisomenucleuscytosolcytoskeletonClass D:cytosol (p = 0.67) | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
| AT4G35230
| Experimentalprotein kinase assay | FSW = 0.1778
| Class A:vacuoleplasma membraneClass D:cytosol (p = 0.67) | BSK1 (BR-SIGNALING KINASE 1) ATP BINDING / BINDING / KINASE/ PROTEIN KINASE/ PROTEIN TYROSINE KINASE |
| AT1G71830
| Experimentalcoimmunoprecipitationin vitroAffinity Capture-MSbiochemicalbiochemicalfluorescence acceptor donor pairAffinity Capture-Westerncoimmunoprecipitationaffinity technology | FSW = 0.1793
| Class A:plasma membraneClass B:vacuoleunclearendoplasmic reticulumClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
| AT4G33430
| Experimentaltwo hybridin vitroAffinity Capture-WesternAffinity Capture-Westernbiochemicalinteraction detection methodSynthetic RescuebiochemicalReconstituted ComplexAffinity Capture-Westernfluorescence acceptor donor pairfluorescence acceptor donor pairin vitroin vitroaffinity technology | FSW = 0.2707
| Class A:plasma membraneClass B:vacuoleextracellularClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE) KINASE/ PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ PROTEIN SERINE/THREONINE KINASE |
| AT5G42750
| Experimentalcoimmunoprecipitationtwo hybridReconstituted ComplexAffinity Capture-Western | FSW = 0.0896
| Class A:plasma membraneClass B:vacuolecytosol | BKI1 (BRI1 KINASE INHIBITOR 1) PROTEIN HETERODIMERIZATION |
| AT5G19280
| ExperimentalAffinity Capture-Westernfar western blottingCo-crystal StructureCo-crystallizationaffinity technology | FSW = 0.2646
| Class A:plasma membraneClass B:vacuoleClass D:extracellular (p = 0.86)endoplasmic reticulum (p = 0.46)cytosol (p = 0.67) | KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE) PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN KINASE BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G58220
| Experimentalprotein kinase assaytwo hybridco-fractionationCo-fractionation | FSW = 0.0426
| Class B:vacuoleplasma membraneperoxisomeClass D:cytosol (p = 0.67) | TTL (TRANSTHYRETIN-LIKE PROTEIN) STEROID BINDING |
| AT1G75080
| Experimentalbiochemical | FSW = 0.1731
| Unknown | BZR1 (BRASSINAZOLE-RESISTANT 1) DNA BINDING / TRANSCRIPTION REGULATOR/ TRANSCRIPTION REPRESSOR |
| AT1G32640
| Experimental | FSW = 0.0561
| Unknown | MYC2 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT2G46280
| ExperimentalcoimmunoprecipitationAffinity Capture-Western | FSW = 0.0155
| Unknown | TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G55610
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.2395
| Class C:plasma membrane | BRL1 (BRI 1 LIKE) KINASE |
| AT2G01950
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0546
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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