Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT4G39960 - ( DNAJ heat shock family protein )
11 Proteins interacs with AT4G39960| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G09590
   | PredictedReconstituted ComplexAffinity Capture-WesternCo-purificationbiochemical | FSW = 0.0255
| Class C:plastid | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
| AT2G22360
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1600
| Class C:plastid | DNAJ HEAT SHOCK FAMILY PROTEIN |
| AT3G44110
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1026
| Unknown | ATJ3 PROTEIN BINDING |
| AT3G50670
| Predictedtwo hybrid | FSW = 0.0173
| Unknown | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT3G53170
| PredictedGene fusion method | FSW = 0.2105
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN GLUTAMINE BIOSYNTHETIC PROCESS LOCATED IN NUCLEOLUS EXPRESSED IN 9 PLANT STRUCTURES EXPRESSED DURING 6 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT5G487301) HAS 17188 BLAST HITS TO 5538 PROTEINS IN 167 SPECIES ARCHAE - 1 BACTERIA - 16 METAZOA - 307 FUNGI - 211 PLANTS - 16025 VIRUSES - 0 OTHER EUKARYOTES - 628 (SOURCE NCBI BLINK) |
| AT1G28210
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2395
| Unknown | ATJ1 HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT5G48030
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2158
| Unknown | GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT1G04980
| PredictedGene fusion method | FSW = 0.1333
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
| AT4G26780
| PredictedAffinity Capture-Western | FSW = 0.0861
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
| AT4G33240
| PredictedAffinity Capture-MS | FSW = 0.0193
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
| AT4G33260
| PredictedGene fusion method | FSW = 0.1429
| Unknown | CDC202 SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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