Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01390 - ( DNAJ heat shock protein putative )
48 Proteins interacs with AT5G01390Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G16480 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING |
AT4G13010 | Predictedinterologs mapping | FSW = 0.0769
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT1G23310 | PredictedPhenotypic Suppression | FSW = 0.0561
| Unknown | GGT1 (GLUTAMATEGLYOXYLATE AMINOTRANSFERASE) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT2G25140 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G69740 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSCo-purificationPhenotypic Enhancement | FSW = 0.0686
| Unknown | HEMB1 CATALYTIC/ METAL ION BINDING / PORPHOBILINOGEN SYNTHASE |
AT5G39740 | Predictedtwo hybrid | FSW = 0.0070
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT5G03160 | Predictedin vitrotwo hybridAffinity Capture-MS | FSW = 0.0678
| Unknown | ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK) BINDING / HEAT SHOCK PROTEIN BINDING |
AT4G17270 | PredictedPhenotypic Suppression | FSW = 0.0364
| Unknown | MO25 FAMILY PROTEIN |
AT1G13320 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G79920 | PredictedReconstituted ComplexAffinity Capture-Western | FSW = 0.0708
| Unknown | ATP BINDING |
AT4G02450 | Predictedin vitroAffinity Capture-MS | FSW = 0.0708
| Unknown | GLYCINE-RICH PROTEIN |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0347
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0171
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G79020 | PredictedAffinity Capture-MS | FSW = 0.0607
| Unknown | TRANSCRIPTION FACTOR-RELATED |
AT5G16820 | PredictedAffinity Capture-MSin vitro | FSW = 0.0394
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G17690 | Predictedtwo hybrid | FSW = 0.0281
| Unknown | TFL2 (TERMINAL FLOWER 2) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING |
AT3G60510 | PredictedAffinity Capture-MS | FSW = 0.0143
| Unknown | ENOYL-COA HYDRATASE/ISOMERASE FAMILY PROTEIN |
AT3G21390 | PredictedGene fusion method | FSW = 0.0200
| Unknown | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN |
AT5G26980 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT2G14580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0244
| Unknown | ATPRB1 |
AT4G31470 | PredictedPhenotypic Suppression | FSW = 0.0970
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT5G02730 | PredictedAffinity Capture-MS | FSW = 0.0372
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G23580 | PredictedPhenotypic Suppression | FSW = 0.0403
| Unknown | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0064
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G71300 | Predictedtwo hybrid | FSW = 0.0209
| Unknown | VPS52/SAC2 FAMILY PROTEIN |
AT5G23570 | Predictedtwo hybrid | FSW = 0.0211
| Unknown | SGS3 (SUPPRESSOR OF GENE SILENCING 3) |
AT5G41910 | Predictedtwo hybrid | FSW = 0.0187
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT5G56750 | Predictedtwo hybrid | FSW = 0.0413
| Unknown | NDR FAMILY PROTEIN |
AT1G09270 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0706
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G16230 | PredictedPhenotypic Suppression | FSW = 0.0629
| Unknown | SYNTAXIN-RELATED FAMILY PROTEIN |
AT3G51880 | Predictedinterologs mapping | FSW = 0.0265
| Unknown | HMGB1 (HIGH MOBILITY GROUP B 1) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT4G29640 | PredictedAffinity Capture-MS | FSW = 0.0277
| Unknown | CYTIDINE DEAMINASE PUTATIVE / CYTIDINE AMINOHYDROLASE PUTATIVE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0204
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0257
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0394
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT1G56090 | PredictedAffinity Capture-MS | FSW = 0.0165
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G04695 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | CPK31 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21800 | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | QQT2 (QUATRE-QUART2) ATP BINDING / NUCLEOTIDE BINDING |
AT5G26110 | PredictedAffinity Capture-MS | FSW = 0.0288
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT5G38890 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G28470 | PredictedPhenotypic Suppression | FSW = 0.0431
| Unknown | TRANSPORTER |
AT5G25530 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2149
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT3G08910 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1449
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G10350 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0788
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G28480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2467
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT1G59725 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2078
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G20560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1614
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT3G47940 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1069
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454