Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01410 - ( RSR4 (REDUCED SUGAR RESPONSE 4) protein heterodimerization/ protein homodimerization )

46 Proteins interacs with AT5G01410
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G60540

Experimental

two hybrid

FSW = 0.0269

Class A:

plasma membrane

nucleus

cytosol

Class B:

plastid

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT5G14750

Experimental

FSW = 0.0327

Class A:

nucleus

Class B:

plastid

plasma membrane

cytosol

 ATMYB66 (MYB DOMAIN PROTEIN 66) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT2G38230

Experimental

two hybrid

FSW = 0.1046

Class A:

cytosol

Class B:

plastid

plasma membrane

nucleus

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 ATPDX11 (PYRIDOXINE BIOSYNTHESIS 11) PROTEIN HETERODIMERIZATION
AT3G16050

Experimental

two hybrid

pull down

FSW = 0.0134

Class A:

cytosol

Class B:

plastid

plasma membrane

nucleus

Class D:

mitochondrion (p = 0.82)

cytosol (p = 0.67)

 A37 PROTEIN HETERODIMERIZATION
AT4G26970

Predicted

Synthetic Lethality

FSW = 0.0076

Class C:

plastid

 ACONITATE HYDRATASE/ COPPER ION BINDING
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0546

Class C:

plastid

 WOUND-RESPONSIVE FAMILY PROTEIN
AT5G03650

Predicted

Synthetic Lethality

FSW = 0.1210

Class C:

plastid

 SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME
AT5G53480

Predicted

interologs mapping

FSW = 0.0250

Class C:

plastid

 IMPORTIN BETA-2 PUTATIVE
AT5G23740

Predicted

Synthetic Lethality

FSW = 0.0038

Class C:

plasma membrane

nucleus

cytosol

 RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G36880

Predicted

Synthetic Lethality

synthetic growth defect

synthetic growth defect

Synthetic Lethality

FSW = 0.0349

Class C:

plasma membrane

nucleus

 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE
AT2G37270

Predicted

synthetic growth defect

FSW = 0.0560

Class C:

plasma membrane

 ATRPS5B (RIBOSOMAL PROTEIN 5B) STRUCTURAL CONSTITUENT OF RIBOSOME
AT2G01630

Predicted

Synthetic Lethality

FSW = 0.0113

Class C:

plasma membrane

 GLYCOSYL HYDROLASE FAMILY 17 PROTEIN / BETA-13-GLUCANASE PUTATIVE
AT2G39480

Predicted

Synthetic Lethality

FSW = 0.0534

Class C:

plasma membrane

 PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT1G76300

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

FSW = 0.0716

Class C:

nucleus

 SMD3 (SNRNP CORE PROTEIN SMD3)
AT5G60440

Predicted

interologs mapping

FSW = 0.0121

Class C:

nucleus

 AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR
AT3G06720

Predicted

interaction prediction

two hybrid

FSW = 0.0096

Class C:

nucleus

 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT5G43840

Predicted

Synthetic Rescue

FSW = 0.0192

Class C:

nucleus

 AT-HSFA6A DNA BINDING / TRANSCRIPTION FACTOR
AT5G63400

Predicted

interologs mapping

FSW = 0.0155

Unknown

 ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT1G21720

Predicted

Synthetic Rescue

Synthetic Rescue

Synthetic Rescue

Phenotypic Suppression

Phenotypic Enhancement

FSW = 0.0427

Unknown

 PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT3G57990

Predicted

Synthetic Lethality

FSW = 0.0040

Unknown

 UNKNOWN PROTEIN
AT1G53530

Predicted

interologs mapping

interologs mapping

FSW = 0.2397

Unknown

 SIGNAL PEPTIDASE I FAMILY PROTEIN
AT4G26910

Predicted

Synthetic Rescue

Synthetic Rescue

Phenotypic Enhancement

FSW = 0.0136

Unknown

 2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT1G29330

Predicted

Synthetic Lethality

FSW = 0.1461

Unknown

 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) KDEL SEQUENCE BINDING / RECEPTOR
AT5G66590

Predicted

Affinity Capture-MS

FSW = 0.0292

Unknown

 ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT4G33730

Predicted

synthetic growth defect

FSW = 0.0209

Unknown

 PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G14610

Predicted

Phenotypic Suppression

FSW = 0.0647

Unknown

 PR1 (PATHOGENESIS-RELATED GENE 1)
AT2G22540

Predicted

interologs mapping

FSW = 0.0369

Unknown

 SVP (SHORT VEGETATIVE PHASE) TRANSCRIPTION FACTOR/ TRANSLATION REPRESSOR NUCLEIC ACID BINDING
AT5G63960

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0948

Unknown

 EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G29540

Predicted

Synthetic Lethality

FSW = 0.0259

Unknown

 ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT1G34340

Predicted

Synthetic Rescue

FSW = 0.1607

Unknown

 ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN
AT1G34760

Predicted

interologs mapping

interologs mapping

interologs mapping

Synthetic Lethality

FSW = 0.0277

Unknown

 GRF11 (GENERAL REGULATORY FACTOR 11) ATPASE BINDING / AMINO ACID BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G49520

Predicted

Synthetic Lethality

FSW = 0.1039

Unknown

 SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G55810

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Rescue

interologs mapping

FSW = 0.1749

Unknown

 URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT1G80710

Predicted

Dosage Growth Defect

FSW = 0.0702

Unknown

 TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G21890

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.1258

Unknown

 CAD3 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 3) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING
AT2G43190

Predicted

Dosage Growth Defect

FSW = 0.1032

Unknown

 RIBONUCLEASE P FAMILY PROTEIN
AT2G46280

Predicted

interologs mapping

interologs mapping

interologs mapping

FSW = 0.0177

Unknown

 TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G09800

Predicted

Synthetic Lethality

FSW = 0.1404

Unknown

 PROTEIN BINDING
AT4G15700

Predicted

interologs mapping

Affinity Capture-MS

FSW = 0.0163

Unknown

 GLUTAREDOXIN FAMILY PROTEIN
AT4G25950

Predicted

interologs mapping

FSW = 0.0047

Unknown

 VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT4G33950

Predicted

Synthetic Lethality

FSW = 0.0851

Unknown

 OST1 (OPEN STOMATA 1) CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE KINASE/ KINASE/ PROTEIN KINASE
AT5G17250

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0207

Unknown

 CATALYTIC/ TRANSFERASE
AT5G41700

Predicted

two hybrid

FSW = 0.0052

Unknown

 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G46040

Predicted

Synthetic Lethality

FSW = 0.0121

Unknown

 PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT5G48010

Predicted

Synthetic Lethality

FSW = 0.0180

Unknown

 THAS1 (THALIANOL SYNTHASE 1) CATALYTIC/ THALIANOL SYNTHASE
AT5G52200

Predicted

Synthetic Lethality

FSW = 0.0975

Unknown

 UNKNOWN PROTEIN

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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