Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01760 - ( VHS domain-containing protein / GAT domain-containing protein )

8 Proteins interacs with AT5G01760
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G43160

Predicted

Affinity Capture-Western

FSW = 0.1078

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN
AT3G08530

Predicted

Affinity Capture-Western

FSW = 0.0871

Unknown

CLATHRIN HEAVY CHAIN PUTATIVE
AT4G11380

Predicted

Phenotypic Enhancement

FSW = 0.0703

Unknown

BETA-ADAPTIN PUTATIVE
AT3G12400

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.1298

Unknown

ELC UBIQUITIN BINDING
AT4G05320

Predicted

Affinity Capture-Western

FSW = 0.0618

Unknown

UBQ10 (POLYUBIQUITIN 10) PROTEIN BINDING
AT1G21380

Predicted

synthetic growth defect

FSW = 0.2622

Unknown

VHS DOMAIN-CONTAINING PROTEIN / GAT DOMAIN-CONTAINING PROTEIN
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0274

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0228

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454