Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01810 - ( CIPK15 (CBL-INTERACTING PROTEIN KINASE 15) kinase/ protein kinase )

5 Proteins interacs with AT5G01810
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G17615

Experimental

Affinity Capture-Western

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.1290

Unknown

CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING
AT3G20310

Experimental

coimmunoprecipitation

FSW = 0.0618

Unknown

ERF7 (ETHYLINE RESPONSE FACTOR 7) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT5G24270

Experimental

two hybrid

FSW = 0.1379

Unknown

SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G57050

Experimental

two hybrid

two hybrid

Reconstituted Complex

FSW = 0.0556

Unknown

ABI2 (ABA INSENSITIVE 2) PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G26080

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0269

Unknown

ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454