Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01820 - ( ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

25 Proteins interacs with AT5G01820
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G26570

Experimental

two hybrid

protein complementation assay

FSW = 0.1364

Class A:

vacuole

Class D:

cytosol (p = 0.67)

ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING
AT5G55990

Experimental

two hybrid

pull down

Reconstituted Complex

two hybrid

protein complementation assay

two hybrid

FSW = 0.0853

Class A:

vacuole

Class D:

cytosol (p = 0.67)

CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING
AT5G63310

Experimental

FSW = 0.0400

Class B:

vacuole

unclear

plastid

nucleus

Class D:

cytosol (p = 0.67)

NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING
AT4G17615

Experimental

coimmunoprecipitation

FSW = 0.0667

Class B:

vacuole

plasma membrane

Class D:

cytosol (p = 0.67)

CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING
AT5G24270

Experimental

FSW = 0.1406

Class D:

cytosol (p = 0.67)

SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20850

Experimental

FSW = 0.0106

Class D:

cytosol (p = 0.67)

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT4G01420

Experimental

FSW = 0.1214

Class D:

cytosol (p = 0.67)

CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING
AT4G16350

Experimental

Reconstituted Complex

two hybrid

FSW = 0.1109

Unknown

CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING
AT1G64480

Experimental

two hybrid

protein complementation assay

FSW = 0.0207

Unknown

CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING
AT5G63400

Predicted

Synthetic Rescue

FSW = 0.0102

Class C:

vacuole

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT3G26590

Predicted

two hybrid

FSW = 0.0133

Class C:

vacuole

MATE EFFLUX FAMILY PROTEIN
AT1G20620

Predicted

Synthetic Lethality

FSW = 0.1195

Unknown

CAT3 (CATALASE 3) CATALASE
AT5G62880

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

FSW = 0.0625

Unknown

ARAC10 GTP BINDING
AT1G79930

Predicted

Synthetic Rescue

FSW = 0.0804

Unknown

HSP91 ATP BINDING
AT4G13980

Predicted

two hybrid

FSW = 0.0181

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT3G21540

Predicted

Affinity Capture-MS

FSW = 0.0672

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G18600

Predicted

Affinity Capture-MS

FSW = 0.0403

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G19980

Predicted

Affinity Capture-MS

FSW = 0.0045

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT1G01020

Predicted

Co-purification

FSW = 0.0408

Unknown

ARV1
AT1G54560Predicted

Synthetic Rescue

FSW = 0.0724

Unknown

XIE MOTOR/ PROTEIN BINDING
AT1G70290

Predicted

Synthetic Rescue

FSW = 0.0461

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT1G49520

Predicted

Co-purification

FSW = 0.0667

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT4G34555

Predicted

biochemical

FSW = 0.0653

Unknown

40S RIBOSOMAL PROTEIN S25 PUTATIVE
AT5G43340

Predicted

Affinity Capture-MS

FSW = 0.1324

Unknown

PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G21470

Predicted

Gene fusion method

FSW = 0.0368

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454