Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01820 - ( ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )
25 Proteins interacs with AT5G01820Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G26570 | Experimentaltwo hybridprotein complementation assay | FSW = 0.1364
| Class A:vacuoleClass D:cytosol (p = 0.67) | ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING |
AT5G55990 | Experimentaltwo hybridpull downReconstituted Complextwo hybridprotein complementation assaytwo hybrid | FSW = 0.0853
| Class A:vacuoleClass D:cytosol (p = 0.67) | CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING |
AT5G63310 | Experimental | FSW = 0.0400
| Class B:vacuoleunclearplastidnucleusClass D:cytosol (p = 0.67) | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT4G17615 | Experimentalcoimmunoprecipitation | FSW = 0.0667
| Class B:vacuoleplasma membraneClass D:cytosol (p = 0.67) | CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING |
AT5G24270 | Experimental | FSW = 0.1406
| Class D:cytosol (p = 0.67) | SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G20850 | Experimental | FSW = 0.0106
| Class D:cytosol (p = 0.67) | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT4G01420 | Experimental | FSW = 0.1214
| Class D:cytosol (p = 0.67) | CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING |
AT4G16350 | ExperimentalReconstituted Complextwo hybrid | FSW = 0.1109
| Unknown | CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING |
AT1G64480 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0207
| Unknown | CBL8 (CALCINEURIN B-LIKE PROTEIN 8) CALCIUM ION BINDING |
AT5G63400 | PredictedSynthetic Rescue | FSW = 0.0102
| Class C:vacuole | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G26590 | Predictedtwo hybrid | FSW = 0.0133
| Class C:vacuole | MATE EFFLUX FAMILY PROTEIN |
AT1G20620 | PredictedSynthetic Lethality | FSW = 0.1195
| Unknown | CAT3 (CATALASE 3) CATALASE |
AT5G62880 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybrid | FSW = 0.0625
| Unknown | ARAC10 GTP BINDING |
AT1G79930 | PredictedSynthetic Rescue | FSW = 0.0804
| Unknown | HSP91 ATP BINDING |
AT4G13980 | Predictedtwo hybrid | FSW = 0.0181
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT3G21540 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G18600 | PredictedAffinity Capture-MS | FSW = 0.0403
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.0045
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G01020 | PredictedCo-purification | FSW = 0.0408
| Unknown | ARV1 |
AT1G54560 | PredictedSynthetic Rescue | FSW = 0.0724
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G70290 | PredictedSynthetic Rescue | FSW = 0.0461
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G49520 | PredictedCo-purification | FSW = 0.0667
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT4G34555 | Predictedbiochemical | FSW = 0.0653
| Unknown | 40S RIBOSOMAL PROTEIN S25 PUTATIVE |
AT5G43340 | PredictedAffinity Capture-MS | FSW = 0.1324
| Unknown | PHT6 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G21470 | PredictedGene fusion method | FSW = 0.0368
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454