Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G01890 - ( leucine-rich repeat transmembrane protein kinase putative )

8 Proteins interacs with AT5G01890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G43810

Experimental

protein array

FSW = 0.0430

Class A:

plasma membrane

Class D:

cytosol (p = 0.67)

CAM7 (CALMODULIN 7) CALCIUM ION BINDING
AT1G66410

Experimental

protein array

FSW = 0.0482

Class A:

plasma membrane

Class D:

cytosol (p = 0.67)

CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER
AT3G51920

Experimental

protein array

FSW = 0.0658

Unknown

CAM9 (CALMODULIN 9) CALCIUM ION BINDING
AT5G21274

Experimental

protein array

FSW = 0.0608

Unknown

CAM6 (CALMODULIN 6) CALCIUM ION BINDING
AT2G41090

Experimental

protein array

FSW = 0.0148

Unknown

CALMODULIN-LIKE CALCIUM-BINDING PROTEIN 22 KDA (CABP-22)
AT4G14640

Experimental

protein array

FSW = 0.0787

Unknown

CAM8 (CALMODULIN 8) CALCIUM ION BINDING
AT5G07180

Predicted

Gene fusion method

Co-expression

FSW = 0.1262

Unknown

ERL2 (ERECTA-LIKE 2) KINASE
AT3G28040

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0504

Unknown

LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454