Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G02470 - ( DPA transcription factor )
19 Proteins interacs with AT5G02470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G78300 | Experimental | FSW = 0.0268
| Class A:nucleusClass B:vacuoleplasma membraneperoxisomecytosolcytoskeleton | GRF2 (GENERAL REGULATORY FACTOR 2) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G47870 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.1667
| Class A:nucleusClass D:nucleus (p = 0.78) | ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT5G22220 | Experimentalpull downprotein complementation assaytwo hybridcoimmunoprecipitation | FSW = 0.2769
| Class A:nucleusClass D:nucleus (p = 0.78) | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G36010 | Experimentaltwo hybridprotein complementation assay | FSW = 0.0721
| Class A:nucleus | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G40550 | Experimentaltwo hybrid | FSW = 0.0808
| Class B:plastidnucleusClass D:nucleus (p = 0.78) | ETG1 (E2F TARGET GENE 1) |
AT3G12280 | Experimentalpull down | FSW = 0.0526
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G30360 | Experimental | FSW = 0.1270
| Unknown | SIP4 (SOS3-INTERACTING PROTEIN 4) KINASE/ PROTEIN KINASE |
AT4G28980 | Experimentaltwo hybrid | FSW = 0.0522
| Unknown | CYCLIN-DEPENDENT KINASE-ACTIVATING KINASE 1AT / CDK-ACTIVATING KINASE 1AT (CAK1) |
AT1G70210 | Experimentaltwo hybrid | FSW = 0.0870
| Unknown | CYCD11 (CYCLIN D11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G67260 | Experimentaltwo hybrid | FSW = 0.0824
| Unknown | CYCD32 (CYCLIN D32) CYCLIN-DEPENDENT PROTEIN KINASE |
AT2G07698 | PredictedPhenotypic Suppression | FSW = 0.0580
| Class C:nucleus | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT4G34430 | PredictedPhenotypic Enhancement | FSW = 0.0177
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G13920 | PredictedPhenotypic Suppression | FSW = 0.0314
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT5G11510 | PredictedPhenotypic Suppression | FSW = 0.1333
| Class C:nucleus | MYB3R-4 (MYB DOMAIN PROTEIN 3R-4) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G31180 | PredictedPhenotypic Suppression | FSW = 0.0602
| Unknown | ASPARTYL-TRNA SYNTHETASE PUTATIVE / ASPARTATE--TRNA LIGASE PUTATIVE |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT4G11330 | PredictedPhenotypic Enhancement | FSW = 0.0269
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT5G67320 | PredictedPhenotypic Enhancement | FSW = 0.0214
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT5G42220 | Predictedtwo hybrid | FSW = 0.0482
| Unknown | UBIQUITIN FAMILY PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454