Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G02560 - ( HTA12 DNA binding )
41 Proteins interacs with AT5G02560Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedAffinity Capture-MS | FSW = 0.0060
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G20450 | PredictedAffinity Capture-MS | FSW = 0.0827
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14A) |
AT4G01320 | PredictedAffinity Capture-MS | FSW = 0.0186
| Unknown | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0163
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G48990 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | AMP-DEPENDENT SYNTHETASE AND LIGASE FAMILY PROTEIN |
AT1G59820 | PredictedAffinity Capture-MS | FSW = 0.0224
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G23900 | PredictedAffinity Capture-MS | FSW = 0.0617
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT4G24400 | PredictedAffinity Capture-MS | FSW = 0.1361
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT5G12350 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.0656
| Unknown | RAN GTPASE BINDING / CHROMATIN BINDING / ZINC ION BINDING |
AT1G70580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0435
| Unknown | AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) L-ALANINE2-OXOGLUTARATE AMINOTRANSFERASE/ GLYCINE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G06260 | Predictedtwo hybrid | FSW = 0.0242
| Unknown | NUCLEOLAR PROTEIN-RELATED |
AT5G20160 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | RIBOSOMAL PROTEIN L7AE/L30E/S12E/GADD45 FAMILY PROTEIN |
AT2G31970 | PredictedColocalization | FSW = 0.0144
| Unknown | RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING |
AT5G41480 | PredictedAffinity Capture-MS | FSW = 0.0794
| Unknown | GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE |
AT3G12530 | PredictedAffinity Capture-MS | FSW = 0.0972
| Unknown | PSF2 |
AT5G56710 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
AT5G20850 | PredictedColocalization | FSW = 0.0069
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0028
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT1G42480 | Predictedtwo hybrid | FSW = 0.0909
| Unknown | UNKNOWN PROTEIN |
AT1G16900 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | SUGAR BINDING / TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G02680 | Predictedin vitroAffinity Capture-WesternReconstituted Complex | FSW = 0.0818
| Unknown | NBS1 (NIJMEGEN BREAKAGE SYNDROME 1) |
AT3G05740 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0665
| Unknown | RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G16040 | PredictedAffinity Capture-MS | FSW = 0.0072
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G30495 | PredictedReconstituted Complex | FSW = 0.0234
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S FCF2 PRE-RRNA PROCESSING (INTERPROIPR014810) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G547701) HAS 218 BLAST HITS TO 218 PROTEINS IN 114 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 88 FUNGI - 76 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 28 (SOURCE NCBI BLINK) |
AT5G41340 | PredictedAffinity Capture-MSin vitro | FSW = 0.0165
| Unknown | UBC4 (UBIQUITIN CONJUGATING ENZYME 4) UBIQUITIN-PROTEIN LIGASE |
AT5G67320 | PredictedReconstituted Complex | FSW = 0.0051
| Unknown | HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15) |
AT1G20920 | PredictedAffinity Capture-MS | FSW = 0.0683
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT1G78970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1384
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1147
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT2G46860 | PredictedAffinity Capture-MS | FSW = 0.1000
| Unknown | ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
AT3G48960 | Predictedinterologs mapping | FSW = 0.0222
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13C) |
AT4G39330 | PredictedAffinity Capture-MS | FSW = 0.0884
| Unknown | CAD9 (CINNAMYL ALCOHOL DEHYDROGENASE 9) BINDING / CATALYTIC/ OXIDOREDUCTASE/ ZINC ION BINDING |
AT1G47490 | PredictedAffinity Capture-MS | FSW = 0.0348
| Unknown | ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) RNA BINDING |
AT1G78770 | PredictedSynthetic Lethality | FSW = 0.0044
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G24050 | PredictedAffinity Capture-MS | FSW = 0.0158
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT2G29390 | PredictedAffinity Capture-MS | FSW = 0.1099
| Unknown | SMO2-2 (STEROL 4-ALPHA-METHYL-OXIDASE 2-2) 4-ALPHA-METHYL-DELTA7-STEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE |
AT4G33070 | PredictedAffinity Capture-MS | FSW = 0.0469
| Unknown | PYRUVATE DECARBOXYLASE PUTATIVE |
AT5G54800 | PredictedSynthetic RescueAffinity Capture-MS | FSW = 0.0333
| Unknown | GPT1 ANTIPORTER/ GLUCOSE-6-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G19820 | PredictedAffinity Capture-MS | FSW = 0.0875
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G41190 | PredictedAffinity Capture-MS | FSW = 0.0798
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0870
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454