Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G02620 - ( ankyrin repeat family protein )

24 Proteins interacs with AT5G02620
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G10450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0195

Class C:

plasma membrane

GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G43350

Predicted

Gene fusion method

FSW = 0.1576

Class C:

plasma membrane

PHT11 (PHOSPHATE TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G43370

Predicted

Gene fusion method

FSW = 0.0362

Class C:

plasma membrane

APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12360

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1333

Class C:

plasma membrane

ITN1 (INCREASED TOLERANCE TO NACL) PROTEIN BINDING
AT2G01680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1389

Class C:

plasma membrane

ANKYRIN REPEAT FAMILY PROTEIN
AT3G09260

Predicted

Gene fusion method

FSW = 0.0450

Unknown

PYK10 BETA-GLUCOSIDASE/ COPPER ION BINDING / FUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT1G66270

Predicted

Gene fusion method

FSW = 0.0460

Unknown

BGLU21 CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT1G02150

Predicted

Gene fusion method

FSW = 0.0290

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT1G75410

Predicted

Gene fusion method

FSW = 0.0228

Unknown

BLH3 (BEL1-LIKE HOMEODOMAIN 3) DNA BINDING / TRANSCRIPTION FACTOR
AT1G66280

Predicted

Gene fusion method

FSW = 0.0460

Unknown

BGLU22 CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT4G36380

Predicted

Gene fusion method

FSW = 0.0611

Unknown

ROT3 (ROTUNDIFOLIA 3) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN / OXYGEN BINDING / STEROID HYDROXYLASE
AT3G55750

Predicted

two hybrid

FSW = 0.0456

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AD)
AT1G80930

Predicted

two hybrid

FSW = 0.0258

Unknown

MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN
AT5G39850

Predicted

two hybrid

FSW = 0.0334

Unknown

40S RIBOSOMAL PROTEIN S9 (RPS9C)
AT5G60070

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1961

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G09550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1515

Unknown

PROTEIN BINDING
AT1G64630

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.0290

Unknown

WNK10 (WITH NO LYSINE KINASE 10) KINASE/ TRANSCRIPTION FACTOR
AT4G23210

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.0298

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT3G21070

Predicted

Gene fusion method

FSW = 0.0775

Unknown

NADK1 (NAD KINASE 1) NAD+ KINASE/ NADH KINASE/ CALMODULIN BINDING
AT2G34190

Predicted

Gene fusion method

FSW = 0.0334

Unknown

XANTHINE/URACIL PERMEASE FAMILY PROTEIN
AT4G31940

Predicted

Gene fusion method

FSW = 0.0611

Unknown

CYP82C4 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT4G08840

Predicted

Gene fusion method

FSW = 0.0298

Unknown

APUM11 (ARABIDOPSIS PUMILIO 11) RNA BINDING / BINDING
AT3G09330

Predicted

Gene fusion method

FSW = 0.0315

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT1G05030

Predicted

Gene fusion method

FSW = 0.0631

Unknown

HEXOSE TRANSPORTER PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454