Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G02620 - ( ankyrin repeat family protein )
24 Proteins interacs with AT5G02620Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G10450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0195
| Class C:plasma membrane | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G43350 | PredictedGene fusion method | FSW = 0.1576
| Class C:plasma membrane | PHT11 (PHOSPHATE TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G43370 | PredictedGene fusion method | FSW = 0.0362
| Class C:plasma membrane | APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT3G12360 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1333
| Class C:plasma membrane | ITN1 (INCREASED TOLERANCE TO NACL) PROTEIN BINDING |
AT2G01680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1389
| Class C:plasma membrane | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G09260 | PredictedGene fusion method | FSW = 0.0450
| Unknown | PYK10 BETA-GLUCOSIDASE/ COPPER ION BINDING / FUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G66270 | PredictedGene fusion method | FSW = 0.0460
| Unknown | BGLU21 CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT1G02150 | PredictedGene fusion method | FSW = 0.0290
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G75410 | PredictedGene fusion method | FSW = 0.0228
| Unknown | BLH3 (BEL1-LIKE HOMEODOMAIN 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G66280 | PredictedGene fusion method | FSW = 0.0460
| Unknown | BGLU22 CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT4G36380 | PredictedGene fusion method | FSW = 0.0611
| Unknown | ROT3 (ROTUNDIFOLIA 3) OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN / OXYGEN BINDING / STEROID HYDROXYLASE |
AT3G55750 | Predictedtwo hybrid | FSW = 0.0456
| Unknown | 60S RIBOSOMAL PROTEIN L35A (RPL35AD) |
AT1G80930 | Predictedtwo hybrid | FSW = 0.0258
| Unknown | MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN |
AT5G39850 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | 40S RIBOSOMAL PROTEIN S9 (RPS9C) |
AT5G60070 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1961
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G09550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1515
| Unknown | PROTEIN BINDING |
AT1G64630 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0290
| Unknown | WNK10 (WITH NO LYSINE KINASE 10) KINASE/ TRANSCRIPTION FACTOR |
AT4G23210 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0298
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G21070 | PredictedGene fusion method | FSW = 0.0775
| Unknown | NADK1 (NAD KINASE 1) NAD+ KINASE/ NADH KINASE/ CALMODULIN BINDING |
AT2G34190 | PredictedGene fusion method | FSW = 0.0334
| Unknown | XANTHINE/URACIL PERMEASE FAMILY PROTEIN |
AT4G31940 | PredictedGene fusion method | FSW = 0.0611
| Unknown | CYP82C4 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT4G08840 | PredictedGene fusion method | FSW = 0.0298
| Unknown | APUM11 (ARABIDOPSIS PUMILIO 11) RNA BINDING / BINDING |
AT3G09330 | PredictedGene fusion method | FSW = 0.0315
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G05030 | PredictedGene fusion method | FSW = 0.0631
| Unknown | HEXOSE TRANSPORTER PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454