Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G02880 - ( UPL4 ubiquitin-protein ligase )
28 Proteins interacs with AT5G02880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0294
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT3G51260 | PredictedAffinity Capture-Western | FSW = 0.0340
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0250
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0184
| Unknown | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT2G31810 | PredictedAffinity Capture-MS | FSW = 0.0536
| Unknown | ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE |
AT3G04770 | PredictedAffinity Capture-MS | FSW = 0.0230
| Unknown | RPSAB (40S RIBOSOMAL PROTEIN SA B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0246
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G12250 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT4G35830 | PredictedAffinity Capture-MS | FSW = 0.0178
| Unknown | ACONITATE HYDRATASE CYTOPLASMIC / CITRATE HYDRO-LYASE / ACONITASE (ACO) |
AT1G59820 | PredictedAffinity Capture-MS | FSW = 0.0086
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT4G17270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0287
| Unknown | MO25 FAMILY PROTEIN |
AT4G38600 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3457
| Unknown | KAK (KAKTUS) UBIQUITIN-PROTEIN LIGASE |
AT2G20580 | PredictedAffinity Capture-Western | FSW = 0.0723
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT5G19990 | PredictedAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.0254
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT3G12050 | PredictedAffinity Capture-MS | FSW = 0.0935
| Unknown | AHA1 DOMAIN-CONTAINING PROTEIN |
AT2G24490 | PredictedPhenotypic Enhancement | FSW = 0.0117
| Unknown | RPA2 (REPLICON PROTEIN A2) PROTEIN BINDING |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.0204
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT3G13940 | PredictedPhenotypic Enhancement | FSW = 0.0075
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G54840 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0102
| Unknown | SGP1 GTP BINDING |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0115
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT4G26910 | Predictedinteraction predictiontwo hybridinterologs mapping | FSW = 0.0212
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT1G75510 | PredictedPhenotypic Suppression | FSW = 0.0148
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G02580 | PredictedPhenotypic Enhancement | FSW = 0.0129
| Unknown | STE1 (STEROL 1) C-5 STEROL DESATURASE |
AT3G03960 | PredictedAffinity Capture-MS | FSW = 0.0352
| Unknown | CHAPERONIN PUTATIVE |
AT1G60780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0268
| Unknown | HAP13 (HAPLESS 13) PROTEIN BINDING |
AT3G55380 | PredictedAffinity Capture-Western | FSW = 0.0205
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedAffinity Capture-MSAffinity Capture-MSbiochemicalinteraction predictionEnriched domain pairCo-expression | FSW = 0.0139
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G43010 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0555
| Unknown | RPT4A ATPASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454