Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03220 - ( transcriptional co-activator-related )
30 Proteins interacs with AT5G03220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G21350 | Experimental | FSW = 0.1373
| Unknown | RNA POLYMERASE TRANSCRIPTIONAL REGULATION MEDIATOR-RELATED |
AT1G11760 | Experimental | FSW = 0.0527
| Unknown | UNKNOWN PROTEIN |
AT3G56190 | Predictedinteraction prediction | FSW = 0.0043
| Unknown | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
AT1G54270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0192
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT3G12780 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1052
| Unknown | PGK1 (PHOSPHOGLYCERATE KINASE 1) PHOSPHOGLYCERATE KINASE |
AT1G56190 | PredictedAffinity Capture-MS | FSW = 0.0522
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
AT4G35800 | PredictedAffinity Capture-Western | FSW = 0.0739
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G52640 | Predictedtwo hybridSynthetic Rescue | FSW = 0.0112
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G18270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1143
| Unknown | KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN |
AT3G12480 | PredictedSynthetic Rescue | FSW = 0.0661
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G06720 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0293
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT4G31720 | PredictedAffinity Capture-MS | FSW = 0.0521
| Unknown | TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR |
AT2G15430 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0895
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G14270 | Predictedinteraction prediction | FSW = 0.0156
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT4G16420 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0185
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G19910 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.1226
| Unknown | SOH1 FAMILY PROTEIN |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0509
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT2G15400 | PredictedAffinity Capture-Western | FSW = 0.1653
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G26210 | Predictedtwo hybrid | FSW = 0.0407
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT5G41910 | PredictedAffinity Capture-MS | FSW = 0.1884
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT1G04950 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0391
| Unknown | TAF6 (TBP-ASSOCIATED FACTOR 6) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G15780 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.1080
| Unknown | UNKNOWN PROTEIN |
AT3G18740 | PredictedAffinity Capture-MS | FSW = 0.0120
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30C) |
AT4G33240 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0846
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G63610 | PredictedAffinity Capture-MS | FSW = 0.0713
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G26665 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-Western | FSW = 0.1736
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED (TAIRAT5G419101) HAS 223 BLAST HITS TO 223 PROTEINS IN 105 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 112 FUNGI - 83 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 4 (SOURCE NCBI BLINK) |
AT3G07740 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0435
| Unknown | ADA2A (HOMOLOG OF YEAST ADA2 2A) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G71010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0424
| Unknown | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE FAMILY PROTEIN |
AT1G36240 | PredictedAffinity Capture-MS | FSW = 0.0258
| Unknown | 60S RIBOSOMAL PROTEIN L30 (RPL30A) |
AT1G02690 | PredictedAffinity Capture-MS | FSW = 0.0151
| Unknown | IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454