Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03290 - ( isocitrate dehydrogenase putative / NAD+ isocitrate dehydrogenase putative )

37 Proteins interacs with AT5G03290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G47520

Predicted

Phenotypic Suppression

FSW = 0.0178

Class C:

plastid

mitochondrion

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G44350

Predicted

Phenotypic Suppression

FSW = 0.0263

Class C:

plastid

mitochondrion

ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE
AT3G05790

Predicted

interaction prediction

FSW = 0.0878

Class C:

plastid

mitochondrion

LON4 (LON PROTEASE 4) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G14590

Predicted

interologs mapping

FSW = 0.0802

Class C:

plastid

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT5G67630

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0792

Class C:

plastid

DNA HELICASE PUTATIVE
AT1G80560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3140

Class C:

plastid

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT1G29900

Predicted

Affinity Capture-MS

FSW = 0.0369

Class C:

plastid

CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC
AT2G45300

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0136

Class C:

plastid

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G14200

Predicted

Gene neighbors method

Phylogenetic profile method

FSW = 0.3283

Class C:

plastid

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT1G31180

Predicted

Phylogenetic profile method

FSW = 0.3075

Class C:

plastid

3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE
AT5G60390

Predicted

Affinity Capture-MS

FSW = 0.0054

Class C:

mitochondrion

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT5G26860

Predicted

Affinity Capture-MS

FSW = 0.0187

Class C:

mitochondrion

LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT5G23250

Predicted

Phenotypic Suppression

FSW = 0.0901

Class C:

mitochondrion

SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE
AT2G17130

Predicted

in vitro

in vivo

Phylogenetic profile method

Co-expression

FSW = 0.2377

Class C:

mitochondrion

IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT4G35650

Predicted

two hybrid

in vivo

Phylogenetic profile method

Co-expression

FSW = 0.2954

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT4G26910

Predicted

Phenotypic Suppression

FSW = 0.0764

Class C:

mitochondrion

2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT3G09810

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.4840

Class C:

mitochondrion

ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE
AT2G20420

Predicted

Phenotypic Suppression

FSW = 0.0586

Class C:

mitochondrion

SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE
AT5G65750

Predicted

Phenotypic Suppression

FSW = 0.0492

Class C:

mitochondrion

2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE
AT4G35260

Predicted

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

Co-purification

Phenotypic Enhancement

in vivo

Phylogenetic profile method

Co-expression

FSW = 0.3205

Class C:

mitochondrion

IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0540

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G64790Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0574

Unknown

BINDING
AT5G12250

Predicted

Affinity Capture-MS

FSW = 0.0381

Unknown

TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0519

Unknown

PYRUVATE KINASE PUTATIVE
AT2G01430

Predicted

two hybrid

FSW = 0.0364

Unknown

ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR
AT1G03190

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0644

Unknown

UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING
AT3G06720

Predicted

interaction prediction

FSW = 0.0176

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT5G58290

Predicted

Affinity Capture-MS

interaction prediction

Gene neighbors method

Co-expression

FSW = 0.0195

Unknown

RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE
AT5G18650

Predicted

two hybrid

two hybrid

FSW = 0.0539

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT5G22920

Predicted

two hybrid

FSW = 0.0552

Unknown

ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT1G16280

Predicted

Affinity Capture-MS

FSW = 0.0481

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT1G60620

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0159

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G60860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0291

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT4G27640

Predicted

Affinity Capture-MS

FSW = 0.1004

Unknown

IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN
AT1G01960

Predicted

interaction prediction

FSW = 0.0319

Unknown

EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR
AT5G21170

Predicted

interaction prediction

FSW = 0.0085

Unknown

5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT1G32480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3075

Unknown

OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454