Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03290 - ( isocitrate dehydrogenase putative / NAD+ isocitrate dehydrogenase putative )
37 Proteins interacs with AT5G03290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G47520 | PredictedPhenotypic Suppression | FSW = 0.0178
| Class C:plastidmitochondrion | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT2G44350 | PredictedPhenotypic Suppression | FSW = 0.0263
| Class C:plastidmitochondrion | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT3G05790 | Predictedinteraction prediction | FSW = 0.0878
| Class C:plastidmitochondrion | LON4 (LON PROTEASE 4) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / SERINE-TYPE ENDOPEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G14590 | Predictedinterologs mapping | FSW = 0.0802
| Class C:plastidmitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NADP+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT5G67630 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0792
| Class C:plastid | DNA HELICASE PUTATIVE |
AT1G80560 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3140
| Class C:plastid | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT1G29900 | PredictedAffinity Capture-MS | FSW = 0.0369
| Class C:plastid | CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) ATP BINDING / CARBAMOYL-PHOSPHATE SYNTHASE/ CATALYTIC |
AT2G45300 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0136
| Class C:plastid | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G14200 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3283
| Class C:plastid | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT1G31180 | PredictedPhylogenetic profile method | FSW = 0.3075
| Class C:plastid | 3-ISOPROPYLMALATE DEHYDROGENASE CHLOROPLAST PUTATIVE |
AT5G60390 | PredictedAffinity Capture-MS | FSW = 0.0054
| Class C:mitochondrion | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G26860 | PredictedAffinity Capture-MS | FSW = 0.0187
| Class C:mitochondrion | LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE |
AT5G23250 | PredictedPhenotypic Suppression | FSW = 0.0901
| Class C:mitochondrion | SUCCINYL-COA LIGASE (GDP-FORMING) ALPHA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE ALPHA CHAIN PUTATIVE / SCS-ALPHA PUTATIVE |
AT2G17130 | Predictedin vitroin vivoPhylogenetic profile methodCo-expression | FSW = 0.2377
| Class C:mitochondrion | IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G35650 | Predictedtwo hybridin vivoPhylogenetic profile methodCo-expression | FSW = 0.2954
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT4G26910 | PredictedPhenotypic Suppression | FSW = 0.0764
| Class C:mitochondrion | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT3G09810 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.4840
| Class C:mitochondrion | ISOCITRATE DEHYDROGENASE PUTATIVE / NAD+ ISOCITRATE DEHYDROGENASE PUTATIVE |
AT2G20420 | PredictedPhenotypic Suppression | FSW = 0.0586
| Class C:mitochondrion | SUCCINYL-COA LIGASE (GDP-FORMING) BETA-CHAIN MITOCHONDRIAL PUTATIVE / SUCCINYL-COA SYNTHETASE BETA CHAIN PUTATIVE / SCS-BETA PUTATIVE |
AT5G65750 | PredictedPhenotypic Suppression | FSW = 0.0492
| Class C:mitochondrion | 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PUTATIVE / OXOGLUTARATE DECARBOXYLASE PUTATIVE / ALPHA-KETOGLUTARIC DEHYDROGENASE PUTATIVE |
AT4G35260 | PredictedAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MSCo-purificationPhenotypic Enhancementin vivoPhylogenetic profile methodCo-expression | FSW = 0.3205
| Class C:mitochondrion | IDH1 (ISOCITRATE DEHYDROGENASE 1) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0540
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G64790 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0574
| Unknown | BINDING |
AT5G12250 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | TUB6 (BETA-6 TUBULIN) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0519
| Unknown | PYRUVATE KINASE PUTATIVE |
AT2G01430 | Predictedtwo hybrid | FSW = 0.0364
| Unknown | ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR |
AT1G03190 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0644
| Unknown | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING |
AT3G06720 | Predictedinteraction prediction | FSW = 0.0176
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT5G58290 | PredictedAffinity Capture-MSinteraction predictionGene neighbors methodCo-expression | FSW = 0.0195
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G18650 | Predictedtwo hybridtwo hybrid | FSW = 0.0539
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G22920 | Predictedtwo hybrid | FSW = 0.0552
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G16280 | PredictedAffinity Capture-MS | FSW = 0.0481
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0159
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT3G60860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0291
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G27640 | PredictedAffinity Capture-MS | FSW = 0.1004
| Unknown | IMPORTIN BETA-2 SUBUNIT FAMILY PROTEIN |
AT1G01960 | Predictedinteraction prediction | FSW = 0.0319
| Unknown | EDA10 (EMBRYO SAC DEVELOPMENT ARREST 10) ARF GUANYL-NUCLEOTIDE EXCHANGE FACTOR/ BINDING / GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT5G21170 | Predictedinteraction prediction | FSW = 0.0085
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
AT1G32480 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3075
| Unknown | OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454