Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G03430 - ( phosphoadenosine phosphosulfate (PAPS) reductase family protein )

8 Proteins interacs with AT5G03430
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62870

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0076

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G20090

Predicted

Synthetic Lethality

FSW = 0.0536

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT4G35020

Predicted

Synthetic Lethality

FSW = 0.0282

Unknown

ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT5G07060

Predicted

two hybrid

FSW = 0.0800

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G71750

Predicted

two hybrid

FSW = 0.0800

Unknown

PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN
AT2G25100

Predicted

Affinity Capture-MS

FSW = 0.0368

Unknown

RIBONUCLEASE HII FAMILY PROTEIN
AT3G26690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1021

Unknown

ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13) BIS(5-ADENOSYL)-PENTAPHOSPHATASE/ HYDROLASE
AT5G66620

Predicted

Phenotypic Enhancement

FSW = 0.2051

Unknown

DAR6 (DA1-RELATED PROTEIN 6) ZINC ION BINDING

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454