Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G03470 - ( ATB ALPHA protein phosphatase type 2A regulator )

15 Proteins interacs with AT5G03470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26030

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5222

Unknown

ATB DELTA PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G25800

Predicted

two hybrid

FSW = 0.0533

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G04830

Predicted

two hybrid

FSW = 0.1270

Unknown

BINDING
AT1G10430

Predicted

Phenotypic Suppression

FSW = 0.0301

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT2G36010

Predicted

two hybrid

FSW = 0.0526

Unknown

E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT5G61470

Predicted

two hybrid

FSW = 0.0395

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT1G03910

Predicted

two hybrid

FSW = 0.0296

Unknown

EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK)
AT3G54170

Predicted

two hybrid

FSW = 0.0556

Unknown

ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) PROTEIN BINDING
AT3G54930

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5410

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT4G15415

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5613

Unknown

ATB GAMMA POLY(U) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT5G25510

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.7200

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G21650

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5222

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G09880

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5613

Unknown

ATB BETA PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT1G13460

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4662

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT3G26020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2608

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454